Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 0.0e+00 1240.3 775 100.0
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 1.1e-259 900.2 723 83.1
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 3.6e-202 709.1 766 64.1
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 8.1e-202 708.0 783 51.2
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 1.8e-201 706.8 738 67.5
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 4.1e-198 695.7 759 65.1
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 3.1e-193 679.5 776 62.8
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 8.9e-193 677.9 763 63.2
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 9.2e-190 667.9 703 67.0
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 3.6e-186 656.0 710 65.8
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 1.4e-185 654.1 755 62.0
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 1.4e-185 654.1 750 63.5
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 9.0e-185 651.4 768 61.5
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 1.2e-184 651.0 709 67.8
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 1.2e-184 651.0 693 67.8
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 1.5e-184 650.6 799 48.1
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 2.6e-184 649.8 699 66.8
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 2.6e-184 649.8 699 67.7
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 7.6e-184 648.3 695 68.3
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 1.3e-183 647.5 698 67.2
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 1.3e-183 647.5 694 67.3
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 1.7e-183 647.1 763 59.2
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 1.0e-180 637.9 710 66.6
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.3e-180 637.5 711 66.5
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 1.3e-180 637.5 691 66.6
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 1.7e-180 637.1 697 66.6
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 3.9e-180 636.0 691 66.9
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 5.1e-180 635.6 716 64.9
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 6.6e-180 635.2 698 66.3
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 1.9e-179 633.6 762 61.2
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.5e-179 633.3 699 66.1
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 3.3e-179 632.9 709 64.5
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 4.3e-179 632.5 751 62.8
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 2.1e-178 630.2 691 65.0
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 2.8e-178 629.8 706 65.4
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 4.8e-178 629.0 699 65.8
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 4.8e-178 629.0 710 65.6
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 6.2e-178 628.6 695 66.8
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 6.2e-178 628.6 756 63.4
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 1.1e-177 627.9 700 66.9
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 1.1e-177 627.9 693 65.4
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 1.5e-176 624.0 739 62.9
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 2.0e-176 623.6 741 61.9
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 2.6e-176 623.2 703 65.6
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 3.4e-176 622.9 691 63.0
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 3.4e-176 622.9 699 50.6
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 5.8e-176 622.1 708 65.1
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 2.1e-173 613.6 754 60.5
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 3.5e-173 612.8 782 59.6
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 1.8e-172 610.5 730 63.4
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 3.0e-172 609.8 710 65.1
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 3.9e-172 609.4 722 48.6
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 5.1e-172 609.0 702 64.2
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 6.7e-172 608.6 729 63.5
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 1.9e-171 607.1 727 62.3
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 1.9e-171 607.1 725 63.7
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 7.4e-171 605.1 749 60.9
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 9.6e-171 604.7 705 64.7
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 6.2e-170 602.1 717 62.6
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 6.2e-170 602.1 727 62.9
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.4e-169 600.9 727 62.7
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 5.3e-169 599.0 696 64.5
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 6.9e-169 598.6 709 63.5
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 9.0e-169 598.2 714 62.3
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 1.5e-168 597.4 727 62.7
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 2.0e-168 597.0 723 64.0
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 2.6e-168 596.7 720 62.6
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 3.4e-168 596.3 719 63.4
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 7.6e-168 595.1 750 61.9
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 7.6e-168 595.1 748 61.5
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 1.0e-167 594.7 729 62.6
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 1.7e-167 594.0 723 63.1
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 3.8e-167 592.8 723 63.1
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 6.4e-167 592.0 727 62.4
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 6.4e-167 592.0 660 66.7
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 8.4e-167 591.7 714 61.9
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 1.9e-166 590.5 733 61.8
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 3.2e-166 589.7 700 63.1
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 5.5e-166 589.0 718 62.7
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 1.2e-165 587.8 710 48.7
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 4.6e-165 585.9 741 60.7
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 7.9e-165 585.1 764 59.0
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 1.8e-164 583.9 714 61.6
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 3.0e-164 583.2 727 62.6
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 3.0e-164 583.2 730 61.6
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 5.7e-163 578.9 694 62.8
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 3.7e-162 576.2 718 62.1
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.7e-162 576.2 709 59.8
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 2.4e-161 573.5 698 62.5
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 5.3e-161 572.4 868 54.7
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 2.2e-159 567.0 698 61.9
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 8.4e-159 565.1 698 62.0
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 3.2e-158 563.1 698 61.6
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 7.1e-158 562.0 698 61.7
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 4.6e-157 559.3 698 61.7
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 4.6e-157 559.3 693 61.0
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 6.3e-154 548.9 693 60.8
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 1.4e-153 547.7 694 61.0
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 3.4e-152 543.1 708 61.6
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 2.9e-151 540.0 715 54.8
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 3.6e-149 533.1 709 60.1
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 2.5e-147 526.9 703 56.8
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 2.9e-143 513.5 645 60.6
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 9.4e-142 508.4 760 53.9
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 1.6e-141 507.7 739 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 2.2e-127 460.7 756 51.9
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 2.9e-127 460.3 692 51.2
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 2.9e-127 460.3 692 51.2
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 3.2e-126 456.8 679 52.0
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 9.4e-126 455.3 774 53.4
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 4.8e-122 443.0 719 53.8
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 6.1e-117 426.0 650 43.4
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 3.6e-101 373.6 359 55.4
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 4.4e-91 340.1 778 43.3
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 1.3e-90 338.6 570 56.7
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 7.8e-72 276.2 713 40.4
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 8.4e-66 256.1 423 39.2
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 3.0e-63 247.7 871 36.7
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 2.1e-40 171.8 408 31.4
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 9.7e-38 162.9 184 51.6
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 1.5e-35 155.6 123 64.2
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 2.9e-34 151.4 130 58.5
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 2.1e-32 145.2 143 53.1
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 6.7e-31 140.2 122 61.5
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 8.8e-31 139.8 127 55.1
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.8e-28 132.1 193 39.9
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 6.5e-26 123.6 111 55.9
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 7.4e-22 110.2 85 61.2
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.8e-15 89.0 110 49.1
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 2.6e-14 85.1 141 37.6
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 1.7e-13 82.4 78 51.3
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.7e-13 81.3 90 50.0
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 3.1e-12 78.2 65 56.9
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 7.0e-12 77.0 78 51.3
RcHm_v2.0_Chr7g0191891 Rosa chinensis HOM05D005316 ORTHO05D006495 1.0e-10 73.2 92 42.4
Solyc09g018530.3 Solanum lycopersicum HOM05D005316 ORTHO05D006495 1.9e-09 68.9 44 61.4
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 3.4e-06 58.2 49 61.2
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 5.7e-06 57.4 61 54.1


User provided reference genes

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