Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 0.0e+00 1118.2 595 100.0
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 7.9e-157 558.1 539 55.8
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 2.5e-150 536.6 504 54.4
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.0e-140 504.6 504 52.8
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 2.6e-99 367.1 512 39.8
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 4.1e-97 359.8 508 40.2
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 9.2e-97 358.6 518 38.2
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 1.9e-89 334.3 517 37.3
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.5e-88 330.1 520 35.2
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 3.0e-87 327.0 516 36.2
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 6.6e-87 325.9 519 38.0
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 3.3e-86 323.6 508 38.6
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 3.3e-86 323.6 489 36.8
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 4.3e-86 323.2 510 38.2
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 4.3e-86 323.2 517 37.3
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.2e-85 321.6 524 37.6
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.6e-85 321.2 513 35.9
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 2.1e-85 320.9 492 38.2
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 3.6e-85 320.1 521 36.7
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 6.2e-85 319.3 516 37.6
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.8e-84 317.8 519 37.4
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.4e-84 317.4 485 36.3
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 5.2e-84 316.2 530 34.7
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 5.2e-84 316.2 547 34.6
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 6.8e-84 315.8 517 36.9
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 8.9e-84 315.5 536 34.5
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 8.9e-84 315.5 522 36.6
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.2e-83 315.1 556 35.6
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 2.6e-83 313.9 526 34.8
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 5.8e-83 312.8 534 34.3
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.3e-82 311.6 521 36.9
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.2e-82 310.8 523 35.6
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.2e-82 310.8 520 34.8
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 8.4e-82 308.9 529 34.2
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 3.2e-81 307.0 521 35.1
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 7.1e-81 305.8 518 34.7
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 9.3e-81 305.4 522 35.8
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 3.5e-80 303.5 501 36.9
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 7.8e-80 302.4 517 35.2
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 7.8e-80 302.4 518 34.9
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 1.0e-79 302.0 524 36.1
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 2.3e-79 300.8 518 35.1
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 5.1e-79 299.7 518 35.3
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.1e-78 298.5 517 34.6
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 1.1e-78 298.5 526 34.2
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 1.1e-78 298.5 519 35.3
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 2.5e-78 297.4 515 35.9
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 2.5e-78 297.4 514 36.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 2.5e-78 297.4 519 35.3
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 4.3e-78 296.6 522 33.3
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 7.3e-78 295.8 514 35.4
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 1.3e-77 295.0 520 34.2
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 1.6e-77 294.7 509 36.0
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.8e-77 293.9 575 33.0
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 6.2e-77 292.7 553 34.2
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.1e-76 292.0 514 35.4
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.8e-76 291.2 549 33.9
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.8e-76 291.2 525 35.0
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 2.4e-76 290.8 505 35.0
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 3.1e-76 290.4 589 32.1
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.0e-76 290.0 514 35.2
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 5.3e-76 289.7 518 34.2
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 6.9e-76 289.3 479 36.3
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 1.2e-75 288.5 548 33.4
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 1.5e-75 288.1 518 35.7
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.0e-75 287.7 516 33.7
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 4.5e-75 286.6 487 37.2
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 7.6e-75 285.8 518 33.8
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.8e-74 283.5 574 32.4
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 1.1e-73 282.0 483 38.7
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.4e-73 281.6 547 34.0
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 7.1e-73 279.3 510 34.3
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.2e-72 278.5 498 34.9
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 5.1e-71 273.1 520 35.2
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 4.3e-70 270.0 474 37.1
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 1.8e-68 264.6 349 42.1
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 3.1e-68 263.8 521 33.2
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 3.1e-68 263.8 452 35.0
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 4.0e-68 263.5 532 33.8
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 5.3e-68 263.1 572 30.9
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.2e-67 261.9 497 35.2
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.6e-67 260.8 430 38.4
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 1.7e-66 258.1 476 35.1
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 9.0e-60 235.7 489 30.3
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 9.0e-60 235.7 350 40.0
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 1.2e-59 235.3 355 39.2
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 2.6e-59 234.2 351 37.3
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 7.6e-59 232.6 358 37.7
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 5.5e-57 226.5 347 36.9
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 5.5e-57 226.5 523 30.0
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.2e-56 225.3 495 29.1
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 5.1e-55 219.9 676 26.3
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 2.5e-54 217.6 515 29.9
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 2.8e-53 214.2 335 37.3
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 4.8e-53 213.4 355 35.2
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 1.4e-52 211.8 326 36.2
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 2.6e-51 207.6 322 37.9
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 1.0e-50 205.7 321 35.8
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 1.9e-49 201.4 474 31.4
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 7.2e-49 199.5 446 34.3
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.7e-42 178.3 254 40.9
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.9e-42 177.6 421 29.2
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 3.7e-37 160.6 265 36.2
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 1.4e-36 158.7 242 37.6
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.6e-35 154.5 120 61.7
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 7.0e-28 129.8 269 34.9
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 9.7e-22 109.4 118 44.1
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.7e-21 108.6 127 38.6
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 4.5e-19 100.5 100 46.0
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 7.7e-19 99.8 89 46.1
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.7e-18 98.6 78 50.0
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 2.2e-18 98.2 114 39.5
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 2.9e-18 97.8 82 43.9
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 3.8e-18 97.4 90 45.6
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 3.8e-18 97.4 101 45.5
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 2.5e-17 94.7 76 50.0
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 3.2e-17 94.4 166 39.8
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 3.2e-17 94.4 93 43.0
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 5.5e-17 93.6 104 39.4
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 9.4e-17 92.8 73 47.9
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 1.2e-16 92.4 259 25.1
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 2.1e-16 91.7 78 48.7
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 4.7e-16 90.5 90 42.2
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 8.0e-16 89.7 78 44.9
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 1.4e-15 89.0 92 46.7
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 1.8e-15 88.6 145 38.6
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 2.3e-15 88.2 84 41.7
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-14 85.9 138 31.2
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 7.5e-14 83.2 84 47.6
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.1e-12 79.3 136 29.4
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.4e-12 77.0 70 47.1
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 9.1e-12 76.3 157 26.1
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.2e-11 75.9 70 44.3
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.0e-11 75.1 110 36.4
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 4.5e-11 73.9 74 40.5
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.3e-10 72.4 65 40.0
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 1.7e-10 72.0 99 38.4
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.7e-10 72.0 69 44.9
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.7e-10 72.0 69 44.9
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 2.9e-10 71.2 123 32.5
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 8.5e-10 69.7 41 63.4
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.5e-09 68.2 203 28.1
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 1.2e-08 65.9 92 34.8
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 4.7e-08 63.9 104 27.9
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.0e-07 62.8 87 34.5
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.8e-07 60.1 36 55.6


User provided reference genes

Program Settings