Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 1.2e-239 833.6 749 100.0
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 1.2e-197 694.1 715 89.1
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 1.2e-157 561.2 712 80.9
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 3.5e-154 549.7 716 81.0
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 2.1e-138 497.3 713 77.3
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 3.1e-118 430.3 723 71.6
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 3.5e-117 426.8 721 71.2
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 8.3e-111 405.6 715 72.2
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 1.4e-110 404.8 616 78.6
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.1e-107 395.2 369 59.6
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 1.0e-105 388.7 712 69.4
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 9.8e-104 382.1 704 73.0
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 2.9e-103 380.6 611 77.4
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 3.9e-100 370.2 365 58.4
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 2.8e-98 364.0 372 56.2
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 3.1e-97 360.5 623 74.0
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 7.5e-96 355.9 704 72.0
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 1.3e-95 355.1 718 70.8
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.9e-95 354.0 398 77.6
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 6.4e-95 352.8 680 68.8
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 8.3e-95 352.4 727 71.3
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.1e-94 352.1 682 70.7
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 5.4e-94 349.7 623 64.7
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 7.0e-94 349.4 493 66.9
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.6e-93 348.2 623 74.2
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 1.7e-92 344.7 623 74.2
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 3.0e-92 344.0 714 66.2
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 8.6e-92 342.4 706 69.7
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 8.6e-92 342.4 617 73.7
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 1.9e-91 341.3 702 68.5
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 5.6e-91 339.7 315 58.1
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 9.5e-91 339.0 713 70.3
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 8.1e-90 335.9 719 67.2
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 1.1e-89 335.5 697 62.7
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 2.3e-89 334.3 713 67.9
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 2.3e-89 334.3 666 71.0
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 8.9e-89 332.4 623 72.7
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 3.4e-88 330.5 712 67.0
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 5.8e-88 329.7 624 67.9
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 5.8e-88 329.7 711 66.8
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 7.5e-88 329.3 624 72.0
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 3.7e-87 327.0 710 68.6
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 6.4e-87 326.2 684 67.4
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 1.4e-86 325.1 709 66.4
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 2.4e-86 324.3 622 73.8
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 3.2e-86 323.9 622 74.4
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.6e-85 321.6 672 68.5
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 2.7e-85 320.9 413 70.5
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 6.0e-85 319.7 272 59.9
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 6.0e-85 319.7 362 55.8
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 1.0e-84 318.9 555 77.7
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 1.0e-84 318.9 673 72.5
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 2.3e-84 317.8 671 71.1
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 1.1e-83 315.5 676 66.1
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 1.9e-83 314.7 711 65.8
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.9e-83 314.7 620 71.6
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 9.5e-83 312.4 274 60.9
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 1.6e-82 311.6 380 53.9
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 2.8e-82 310.8 722 63.3
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 3.6e-82 310.5 679 67.6
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 8.9e-81 305.8 323 51.4
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 8.9e-81 305.8 365 48.5
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.2e-80 305.4 330 55.5
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.3e-79 302.0 712 68.1
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 6.4e-79 299.7 713 65.4
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 2.4e-78 297.7 528 52.7
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 3.2e-78 297.4 400 68.5
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 7.1e-78 296.2 375 46.4
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 2.1e-77 294.7 457 53.8
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 3.5e-77 293.9 624 68.6
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 3.0e-76 290.8 366 45.9
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 1.1e-75 288.9 633 67.3
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.9e-75 288.1 355 46.2
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 4.3e-75 287.0 616 69.0
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 5.6e-75 286.6 358 46.4
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.2e-74 285.4 627 67.8
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 2.1e-74 284.6 458 61.6
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 8.1e-74 282.7 416 57.0
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 8.1e-74 282.7 510 51.0
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 6.8e-73 279.6 631 67.8
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 6.8e-73 279.6 619 68.3
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 8.9e-73 279.3 623 66.6
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 1.2e-72 278.9 381 45.1
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 9.9e-72 275.8 716 64.9
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 9.3e-70 269.2 200 63.5
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 2.1e-69 268.1 614 62.1
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 2.1e-69 268.1 203 61.6
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 6.0e-69 266.5 614 62.4
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 6.0e-69 266.5 696 60.9
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 7.8e-69 266.2 708 60.9
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.0e-68 265.8 614 62.7
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 1.0e-68 265.8 614 62.5
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 3.9e-68 263.8 199 62.3
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 1.5e-67 261.9 203 58.1
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 4.4e-64 250.4 277 46.6
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 5.4e-62 243.4 500 79.4
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 1.2e-56 225.7 156 72.4
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 1.3e-52 212.2 343 60.9
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 4.9e-47 193.7 278 78.8
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 1.2e-45 189.1 158 57.6
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 6.0e-45 186.8 235 91.1
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.0e-40 171.8 177 53.7
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 6.5e-39 166.8 198 43.9
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 2.4e-33 148.3 121 61.2
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 5.5e-30 137.1 268 32.5
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 1.1e-22 112.8 264 29.9
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 7.5e-11 73.6 60 58.3
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 8.2e-10 70.1 84 45.2
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 1.1e-09 69.7 157 29.3
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 1.8e-09 68.9 166 24.7
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 5.3e-09 67.4 157 29.3
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 9.1e-09 66.6 60 53.3
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 9.1e-09 66.6 56 57.1
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 1.6e-08 65.9 166 27.1
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.0e-07 63.2 58 53.4
Ciclev10007460m.g Citrus clementina HOM05D003056 ORTHO05D003422 1.3e-07 62.8 163 25.8
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 1.7e-07 62.4 56 57.1
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 1.7e-07 62.4 179 25.1
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 2.2e-07 62.0 247 24.3
Gohir.A05G004100 Gossypium hirsutum HOM05D003056 ORTHO05D003422 2.2e-07 62.0 163 24.5
Gohir.D05G004500 Gossypium hirsutum HOM05D003056 ORTHO05D003422 2.2e-07 62.0 163 24.5
Gorai.009G004300 Gossypium raimondii HOM05D003056 ORTHO05D003422 2.2e-07 62.0 163 24.5
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 2.2e-07 62.0 166 26.5
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 2.2e-07 62.0 145 20.0
Rhsim12G0158500 Rhododendron simsii HOM05D003056 ORTHO05D003422 2.2e-07 62.0 167 22.2
Atru.chr7.865 Acer truncatum HOM05D003056 ORTHO05D003422 2.9e-07 61.6 165 24.2
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 3.8e-07 61.2 175 25.1
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 3.8e-07 61.2 145 21.4
Prupe.8G139200 Prunus persica HOM05D003056 ORTHO05D003422 3.8e-07 61.2 139 25.2
Haze_16431 Corylus avellana HOM05D006749 ORTHO05D008352 6.5e-07 60.5 108 31.5
MBI04_g22013_MAGBIO Magnolia biondii HOM05D006749 ORTHO05D008352 6.5e-07 60.5 110 29.1
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 8.5e-07 60.1 152 23.7
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 1.1e-06 59.7 175 24.6
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 1.1e-06 59.7 117 29.1
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 1.5e-06 59.3 169 23.1
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 1.9e-06 58.9 165 26.7
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 1.9e-06 58.9 163 23.9
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 2.5e-06 58.5 151 23.2
PGR083G1300 Punica granatum HOM05D005390 ORTHO05D007086 2.5e-06 58.5 114 39.5
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 3.2e-06 58.2 150 23.3
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 3.2e-06 58.2 144 21.5
Sc10g0007430 Simmondsia chinensis HOM05D006749 ORTHO05D008352 3.2e-06 58.2 123 30.1
SGA_v2.0_scaffold5G02592 Striga asiatica HOM05D006749 ORTHO05D008352 3.2e-06 58.2 109 31.2
Eucgr.C02384 Eucalyptus grandis HOM05D003056 ORTHO05D003422 4.2e-06 57.8 163 23.3
PSO675G3775 Papaver somniferum HOM05D006749 ORTHO05D008352 4.2e-06 57.8 101 33.7
Rhsim12G0197800 Rhododendron simsii HOM05D006749 ORTHO05D008352 4.2e-06 57.8 111 29.7
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 5.5e-06 57.4 145 24.1
Ciclev10023415m.g Citrus clementina HOM05D006749 ORTHO05D008352 5.5e-06 57.4 105 32.4
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 5.5e-06 57.4 165 24.8
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 5.5e-06 57.4 146 21.2
Ah.09g230000 Amaranthus hybridus HOM05D003056 ORTHO05D003422 7.2e-06 57.0 166 21.7
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 7.2e-06 57.0 147 21.8
FvH4_6g31160 Fragaria vesca HOM05D006749 ORTHO05D008352 7.2e-06 57.0 107 30.8
FAN14G3575 Fragaria x ananassa HOM05D006749 ORTHO05D008352 7.2e-06 57.0 107 30.8
PSO229G0046 Papaver somniferum HOM05D006749 ORTHO05D008352 7.2e-06 57.0 101 33.7
Hund00615 Selenicereus undatus HOM05D006749 ORTHO05D008352 7.2e-06 57.0 112 27.7
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 9.4e-06 56.6 140 21.4
Rhsim12G0158600 Rhododendron simsii HOM05D003056 ORTHO05D003422 9.4e-06 56.6 167 22.2


User provided reference genes

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