Gene: AT2G18940

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT2G18940
  • Transcript Identifier AT2G18940.1
  • Gene Type Coding gene
  • Location Chr2 : 8203873-8206341 : negative

Gene Family Information

  • ID HOM05D003056
  • #Genes/#Species 225/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT2G18940.1
  • uniprot O64624

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1); Has 70772 Blast hits to 15680 proteins in 317 species: Archae - 4; Bacteria - 89; Metazoa - 1190; Fungi - 1125; Plants - 65689; Viruses - 0; Other Eukaryotes - 2675 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008150
ND
Gene Ontologybiological_process
GO:0048255
ISO
PLAZA Integrative OrthologymRNA stabilization Zm00001eb274840

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA, HDA
Gene OntologymRNA binding1 2
GO:0005515
IEA
InterProprotein binding
GO:0042802
ISO
PLAZA Integrative Orthologyidentical protein binding Zm00001eb274840

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
ISM
Gene Ontologychloroplast
GO:0009536
IEA
GOA Databaseplastid
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma Zm00001eb274840

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
Mapman id Description
16.11.5.3 RNA processing.organelle machinery.post-transcriptional gene expression regulation.plastidial mRNA processing factor (PPR10)