Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 3.2e-95 351.7 170 100.0
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 3.0e-85 318.5 169 90.5
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 2.0e-73 279.3 177 79.7
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 1.8e-69 266.2 170 77.1
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 2.0e-65 252.7 169 73.4
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 3.5e-65 251.9 173 73.4
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 3.8e-64 248.4 167 73.1
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 1.2e-52 210.3 167 64.1
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 2.6e-52 209.1 177 62.1
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 5.7e-52 208.0 175 61.1
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 5.7e-52 208.0 175 61.1
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 3.7e-51 205.3 174 60.3
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 1.4e-50 203.4 176 60.2
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 4.1e-50 201.8 172 62.2
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 1.7e-48 196.4 177 55.9
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 3.0e-48 195.7 168 58.3
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 8.6e-48 194.1 171 59.1
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 1.1e-47 193.7 177 61.0
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 3.3e-47 192.2 173 59.0
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 9.5e-47 190.7 171 59.6
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 8.0e-46 187.6 199 51.8
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 1.0e-45 187.2 176 56.8
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 3.1e-45 185.7 152 59.2
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 4.0e-45 185.3 170 56.5
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 1.2e-44 183.7 129 65.9
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 1.5e-44 183.3 171 54.4
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 1.5e-44 183.3 174 56.9
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 2.6e-44 182.6 158 59.5
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 3.4e-44 182.2 174 54.0
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 5.8e-44 181.4 189 50.8
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 1.7e-43 179.9 133 66.9
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 2.9e-43 179.1 173 54.9
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 2.9e-43 179.1 174 56.3
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 2.9e-43 179.1 174 56.3
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 3.7e-43 178.7 176 54.0
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 3.7e-43 178.7 176 54.0
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 4.9e-43 178.3 170 54.1
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 6.4e-43 177.9 190 51.1
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 6.4e-43 177.9 167 58.1
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 8.3e-43 177.6 175 56.6
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 8.3e-43 177.6 171 53.8
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 1.4e-42 176.8 168 54.2
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 1.4e-42 176.8 162 56.8
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 1.4e-42 176.8 129 64.3
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 5.4e-42 174.9 167 55.7
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 5.4e-42 174.9 167 52.7
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 9.2e-42 174.1 167 54.5
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 1.2e-41 173.7 127 67.7
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 1.2e-41 173.7 170 56.5
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 1.2e-41 173.7 176 55.1
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 1.3e-40 170.2 173 53.2
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.3e-40 170.2 123 66.7
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 1.7e-40 169.9 181 51.4
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 2.3e-40 169.5 185 51.9
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 3.0e-40 169.1 173 54.9
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 3.9e-40 168.7 173 53.2
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 1.1e-39 167.2 176 52.8
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 1.1e-39 167.2 165 52.7
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 1.9e-39 166.4 132 62.1
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 2.5e-39 166.0 177 51.4
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 3.3e-39 165.6 163 54.6
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 7.3e-39 164.5 175 51.4
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 9.5e-39 164.1 131 59.5
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 1.2e-38 163.7 171 52.6
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 1.2e-38 163.7 171 52.6
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 1.2e-38 163.7 144 56.2
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 1.2e-38 163.7 181 51.9
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 2.8e-38 162.5 141 57.4
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 4.7e-38 161.8 231 43.7
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 6.2e-38 161.4 173 50.3
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 1.4e-37 160.2 141 56.7
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 6.8e-37 157.9 145 55.2
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 8.9e-37 157.5 156 54.5
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 3.4e-36 155.6 163 52.8
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 4.4e-36 155.2 168 51.8
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 2.9e-35 152.5 132 59.8
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 1.4e-34 150.2 101 71.3
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 3.2e-34 149.1 167 50.3
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 4.1e-34 148.7 154 55.2
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 1.6e-33 146.7 100 70.0
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.3e-32 143.7 97 69.1
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 1.1e-31 140.6 121 54.5
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 3.3e-31 139.0 105 67.6
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 9.5e-31 137.5 171 47.4
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 3.6e-30 135.6 173 48.6
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 1.4e-29 133.7 84 73.8
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 1.4e-29 133.7 123 59.3
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 4.0e-29 132.1 102 60.8
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 4.0e-29 132.1 111 61.3
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 2.9e-27 125.9 167 44.9
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 3.8e-27 125.6 97 61.9
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 2.1e-25 119.8 98 58.2
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 7.3e-23 111.3 163 44.8
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 1.2e-22 110.5 93 63.4
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 1.8e-21 106.7 111 55.0
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 1.1e-18 97.4 124 43.5
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.5e-15 87.0 161 39.1
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 1.5e-15 87.0 111 48.6
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 7.3e-15 84.7 52 75.0
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 2.8e-14 82.8 62 62.9
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.2e-12 77.4 127 35.4
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 3.4e-12 75.9 172 35.5
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 1.9e-07 60.1 100 38.0
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 1.9e-07 60.1 75 38.7
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.9e-07 60.1 69 44.9
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 4.3e-07 58.9 69 40.6
vmacro14632 Vaccinium macrocarpon HOM05D002376 ORTHO05D004654 4.3e-07 58.9 69 40.6
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 5.6e-07 58.5 69 40.6
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 5.6e-07 58.5 69 40.6
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 5.6e-07 58.5 69 42.0
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 7.4e-07 58.2 69 40.6
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 7.4e-07 58.2 69 40.6
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 7.4e-07 58.2 69 42.0
BcaC01g05989 Brassica carinata HOM05D002376 ORTHO05D004654 9.6e-07 57.8 69 40.6
A04p23110 Brassica napus HOM05D002376 ORTHO05D004654 9.6e-07 57.8 69 40.6
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 9.6e-07 57.8 69 40.6
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 9.6e-07 57.8 69 40.6
BraA04t17841Z Brassica rapa HOM05D002376 ORTHO05D004654 9.6e-07 57.8 69 40.6
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 9.6e-07 57.8 69 40.6
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 1.3e-06 57.4 103 34.0
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 1.3e-06 57.4 69 39.1
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 1.3e-06 57.4 99 33.3
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 1.3e-06 57.4 69 40.6
Thhalv10016841m.g Eutrema salsugineum HOM05D002376 ORTHO05D004654 1.3e-06 57.4 69 40.6
Sp4g12910 Schrenkiella parvula HOM05D002376 ORTHO05D004654 1.3e-06 57.4 69 40.6
AL4G25210 Arabidopsis lyrata HOM05D002376 ORTHO05D004654 1.6e-06 57.0 69 40.6
AT2G30350 Arabidopsis thaliana HOM05D002376 ORTHO05D004654 1.6e-06 57.0 69 40.6
CARHR123670 Cardamine hirsuta HOM05D002376 ORTHO05D004654 1.6e-06 57.0 69 40.6
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.6e-06 57.0 78 38.5
Gohir.A13G235800 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.6e-06 57.0 78 38.5
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.6e-06 57.0 78 38.5
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 1.6e-06 57.0 78 38.5
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 1.6e-06 57.0 69 42.0
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 1.6e-06 57.0 69 40.6
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 2.1e-06 56.6 69 42.0
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 2.1e-06 56.6 69 40.6
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 2.1e-06 56.6 69 42.0
Sc12g0000140 Simmondsia chinensis HOM05D002376 ORTHO05D004654 2.1e-06 56.6 69 39.1
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 2.8e-06 56.2 69 39.1
CSS0048295 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 2.8e-06 56.2 69 40.6
CSS0050025 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D004654 2.8e-06 56.2 69 40.6
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 2.8e-06 56.2 69 37.7
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 2.8e-06 56.2 69 39.1
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 2.8e-06 56.2 95 38.9
Nn5g26899 Nelumbo nucifera HOM05D002376 ORTHO05D004654 2.8e-06 56.2 69 40.6
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 2.8e-06 56.2 69 40.6
Carub.0004s1150 Capsella rubella HOM05D002376 ORTHO05D004654 3.7e-06 55.8 69 40.6
ATR0681G169 Amborella trichopoda HOM05D002376 ORTHO05D004654 4.8e-06 55.5 69 40.6
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 4.8e-06 55.5 69 39.1
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 4.8e-06 55.5 78 38.5
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 4.8e-06 55.5 69 40.6
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 4.8e-06 55.5 69 37.7
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 4.8e-06 55.5 69 44.9
THA.LOC104826270 Tarenaya hassleriana HOM05D002376 ORTHO05D004654 4.8e-06 55.5 69 39.1
PRCOL_00003986 Prasinoderma coloniale HOM05D000916 ORTHO05D009274 6.2e-06 55.1 81 43.2
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 6.2e-06 55.1 77 40.3
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 6.2e-06 55.1 69 40.6
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 6.2e-06 55.1 57 45.6
Cc01_g15150 Coffea canephora HOM05D002376 ORTHO05D004654 8.1e-06 54.7 78 38.5
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 8.1e-06 54.7 69 40.6
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 8.1e-06 54.7 71 39.4


User provided reference genes

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