Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 0.0e+00 1319.7 1021 100.0
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 6.3e-287 991.1 971 80.9
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.0e-284 983.8 976 79.3
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 8.2e-271 937.6 957 75.5
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 1.2e-232 810.8 972 74.8
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 3.2e-230 802.7 620 80.0
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.6e-226 790.4 978 72.5
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 2.3e-220 770.0 596 82.9
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 9.6e-219 764.6 590 80.5
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.2e-218 764.2 591 82.7
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 2.1e-218 763.5 620 77.6
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 7.6e-216 755.0 620 77.1
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 8.4e-215 751.5 633 76.6
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.9e-214 750.4 619 77.1
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.1e-211 741.1 623 72.7
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.5e-208 729.2 632 74.4
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 1.4e-206 724.2 624 70.7
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 6.0e-205 718.8 572 79.4
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 6.7e-204 715.3 619 74.2
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 7.4e-203 711.8 600 73.8
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.0e-201 706.1 624 71.6
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 9.0e-201 704.9 624 71.5
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.7e-199 700.7 574 74.2
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 4.9e-199 699.1 622 70.7
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 2.4e-198 696.8 644 71.3
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.5e-197 693.0 644 69.6
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 6.0e-197 692.2 645 71.6
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 1.3e-196 691.0 640 69.4
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.8e-196 690.6 640 68.6
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 2.3e-196 690.3 622 72.3
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 9.6e-195 684.9 616 72.1
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 1.1e-193 681.4 620 69.7
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 2.4e-193 680.2 632 69.1
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 7.6e-192 675.2 636 71.1
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.4e-190 671.0 624 70.8
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 1.4e-190 671.0 650 70.2
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 2.5e-190 670.2 633 67.3
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 7.1e-190 668.7 650 70.2
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 7.1e-190 668.7 571 75.0
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 9.3e-190 668.3 606 68.8
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 1.0e-188 664.8 604 68.4
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 2.3e-188 663.7 503 78.9
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 6.7e-188 662.1 594 69.2
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.2e-186 657.1 650 69.5
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 6.3e-186 655.6 622 66.4
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 1.1e-185 654.8 607 65.7
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.4e-185 653.7 624 68.9
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 3.1e-185 653.3 624 68.9
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.3e-185 652.5 624 68.9
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 1.5e-184 651.0 617 67.3
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.5e-184 651.0 624 68.9
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 3.4e-184 649.8 574 70.9
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.4e-182 644.4 625 66.2
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 1.2e-181 641.3 623 67.7
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 2.1e-181 640.6 616 70.0
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.0e-180 638.3 607 65.9
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 4.3e-179 632.9 554 70.9
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 5.7e-179 632.5 646 64.1
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 9.7e-179 631.7 614 67.3
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 1.7e-178 630.9 601 66.6
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 2.2e-178 630.6 628 62.7
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.1e-177 628.2 612 68.5
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 1.4e-177 627.9 499 74.9
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.4e-177 627.9 632 65.3
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.8e-177 627.5 649 64.9
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.8e-177 627.5 635 65.7
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.2e-175 620.5 664 62.0
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 2.2e-175 620.5 631 66.1
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.9e-174 617.5 507 73.8
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 2.5e-174 617.1 977 66.7
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 2.7e-173 613.6 621 65.2
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 4.7e-173 612.8 621 67.1
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 7.9e-173 612.1 611 68.2
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 3.9e-172 609.8 629 67.2
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 3.9e-172 609.8 629 67.2
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 3.9e-172 609.8 617 66.9
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 2.6e-171 607.1 577 65.0
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 4.8e-170 602.8 606 66.3
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.8e-169 600.9 624 67.0
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 5.3e-169 599.4 622 63.8
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 5.3e-169 599.4 581 64.7
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 5.9e-168 595.9 513 66.9
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 6.5e-167 592.4 513 66.5
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 6.5e-167 592.4 513 66.7
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 6.5e-167 592.4 513 66.7
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 1.4e-166 591.3 605 65.3
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.9e-166 590.9 513 66.5
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 7.2e-166 589.0 597 68.0
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 4.7e-165 586.3 632 63.8
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.0e-164 585.1 613 64.1
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 2.3e-164 583.9 627 63.6
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.5e-163 581.3 516 65.1
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 5.7e-163 579.3 595 64.0
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 5.9e-160 569.3 599 63.8
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 1.2e-157 561.6 614 65.5
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 2.1e-157 560.8 635 61.3
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 3.0e-156 557.0 614 65.3
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.2e-155 555.1 645 62.6
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 2.4e-153 547.4 494 67.0
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 5.0e-151 539.7 545 69.0
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 1.1e-134 485.3 454 74.2
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 6.4e-122 443.0 447 72.9
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 2.4e-121 441.0 509 58.0
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 3.9e-119 433.7 514 58.9
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.1e-116 425.6 606 53.6
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 3.3e-110 404.1 288 72.2
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 1.8e-108 398.3 293 71.0
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.9e-90 337.0 209 78.0
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 1.0e-87 329.3 512 48.2
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.3e-85 322.4 546 46.0
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 6.5e-74 283.5 444 46.6
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.6e-72 278.9 331 68.3
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 5.1e-71 273.9 651 46.7
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 4.3e-70 270.8 311 71.4
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 5.7e-70 270.4 651 46.1
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 7.4e-70 270.0 296 59.5
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.0e-66 259.6 177 72.9
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 2.2e-66 258.5 276 64.1
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 5.0e-66 257.3 206 73.8
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 3.6e-64 251.1 237 57.0
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.5e-62 245.0 302 60.9
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 4.8e-61 240.7 176 70.5
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 8.6e-26 123.6 148 56.1
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 5.5e-25 120.9 71 83.1
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 9.8e-22 110.2 58 91.4
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 2.4e-20 105.5 89 59.6
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 9.2e-20 103.6 63 74.6
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 1.2e-16 93.2 105 52.4
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 2.1e-16 92.4 80 66.2
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 2.1e-16 92.4 262 36.6
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 2.8e-16 92.0 98 55.1
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 6.1e-16 90.9 399 31.8
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 5.8e-14 84.3 105 50.5
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 9.8e-14 83.6 412 25.2
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 4.9e-13 81.3 266 40.2
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 1.1e-12 80.1 82 78.0
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 1.6e-08 66.2 133 62.4
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 6.8e-07 60.8 104 35.6
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 6.8e-07 60.8 104 35.6
A01p24780 Brassica napus HOM05D001023 ORTHO05D000912 2.6e-06 58.9 92 35.9
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 4.4e-06 58.2 104 32.7
Gohir.A11G291200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 4.4e-06 58.2 104 33.7
Gohir.D11G301400 Gossypium hirsutum HOM05D001023 ORTHO05D000912 4.4e-06 58.2 104 33.7
Gorai.007G335300 Gossypium raimondii HOM05D001023 ORTHO05D000912 4.4e-06 58.2 104 33.7
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 4.4e-06 58.2 104 32.7
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 5.8e-06 57.8 116 30.2
ATR0730G215 Amborella trichopoda HOM05D001023 ORTHO05D000912 7.5e-06 57.4 107 33.6
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 7.5e-06 57.4 93 35.5
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 7.5e-06 57.4 93 35.5
Migut.M00654 Erythranthe guttata HOM05D001023 ORTHO05D000912 7.5e-06 57.4 105 35.2
Aa31LG10G1640 Aethionema arabicum HOM05D001023 ORTHO05D000912 9.8e-06 57.0 104 34.6
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 9.8e-06 57.0 250 36.0
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 9.8e-06 57.0 97 35.1
CDE11G0185 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 9.8e-06 57.0 92 37.0
ECA232G0760 Erigeron canadensis HOM05D001023 ORTHO05D000912 9.8e-06 57.0 92 38.0
HanXRQChr05g0139321 Helianthus annuus HOM05D001023 ORTHO05D000912 9.8e-06 57.0 92 37.0
Lsat_1_v5_gn_9_50120 Lactuca sativa HOM05D001023 ORTHO05D000912 9.8e-06 57.0 92 37.0


User provided reference genes

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