Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 9.0e-158 560.1 258 100.0
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 1.2e-117 426.8 345 64.6
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 5.2e-113 411.4 356 61.0
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 2.2e-111 406.0 386 57.3
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 7.3e-107 391.0 212 86.8
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 9.5e-107 390.6 212 87.3
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 9.5e-107 390.6 212 87.3
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 2.1e-106 389.4 388 55.2
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 2.1e-106 389.4 212 86.8
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 2.1e-106 389.4 212 86.8
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 2.8e-106 389.0 212 86.3
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 4.7e-106 388.3 212 85.4
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 6.2e-106 387.9 212 86.3
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 6.2e-106 387.9 212 86.3
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 6.2e-106 387.9 212 86.3
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.0e-105 387.1 212 85.8
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.4e-105 386.7 211 84.8
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.4e-105 386.7 211 84.8
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.4e-105 386.7 212 84.0
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 3.1e-105 385.6 212 85.4
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 3.1e-105 385.6 212 85.4
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 3.1e-105 385.6 212 85.4
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 4.0e-105 385.2 212 84.9
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 4.0e-105 385.2 212 84.9
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 4.0e-105 385.2 212 84.9
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 5.2e-105 384.8 212 84.0
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 5.2e-105 384.8 212 84.0
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.8e-105 384.4 212 85.4
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 6.8e-105 384.4 212 85.4
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 6.8e-105 384.4 212 85.4
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 8.9e-105 384.0 212 85.4
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 8.9e-105 384.0 212 85.4
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 8.9e-105 384.0 212 85.4
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 8.9e-105 384.0 212 84.9
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 8.9e-105 384.0 212 84.4
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 8.9e-105 384.0 212 84.9
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 8.9e-105 384.0 212 84.4
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 8.9e-105 384.0 212 84.4
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 8.9e-105 384.0 211 84.4
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 8.9e-105 384.0 211 84.4
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 8.9e-105 384.0 212 84.0
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 1.2e-104 383.6 212 85.4
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.2e-104 383.6 212 84.4
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 1.2e-104 383.6 211 83.9
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 2.0e-104 382.9 212 82.5
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.0e-104 382.9 212 82.5
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 2.0e-104 382.9 212 82.5
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 2.6e-104 382.5 212 84.4
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 2.6e-104 382.5 212 84.0
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 2.6e-104 382.5 212 84.0
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 2.6e-104 382.5 212 83.5
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 3.4e-104 382.1 212 83.0
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 3.4e-104 382.1 212 83.5
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 3.4e-104 382.1 212 84.0
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 4.4e-104 381.7 212 83.0
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 5.8e-104 381.3 212 84.4
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 5.8e-104 381.3 212 82.1
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 7.5e-104 380.9 212 82.1
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 1.3e-103 380.2 212 83.0
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.3e-103 380.2 212 83.5
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.7e-103 379.8 212 83.5
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 1.7e-103 379.8 212 84.0
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 2.2e-103 379.4 212 83.0
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 2.2e-103 379.4 212 84.0
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 2.2e-103 379.4 212 82.1
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 2.2e-103 379.4 212 82.5
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 2.2e-103 379.4 212 84.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 3.7e-103 378.6 212 82.5
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 3.7e-103 378.6 211 83.4
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 4.9e-103 378.3 212 83.5
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 4.9e-103 378.3 212 83.5
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 4.9e-103 378.3 212 82.1
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 4.9e-103 378.3 212 83.0
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 8.3e-103 377.5 212 82.5
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 8.3e-103 377.5 212 82.5
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.1e-102 377.1 211 82.5
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.4e-102 376.7 212 83.0
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 1.4e-102 376.7 212 82.1
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 1.9e-102 376.3 212 82.1
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 2.4e-102 375.9 212 82.5
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 3.2e-102 375.6 212 82.5
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 3.2e-102 375.6 212 83.0
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 5.4e-102 374.8 212 82.5
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 5.4e-102 374.8 212 82.5
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 5.4e-102 374.8 212 82.1
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 7.0e-102 374.4 212 81.6
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 7.0e-102 374.4 212 82.1
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 9.2e-102 374.0 218 81.7
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.2e-101 373.6 212 80.7
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 1.2e-101 373.6 212 80.7
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 1.6e-101 373.2 212 81.6
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.7e-101 372.5 220 80.0
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 6.0e-101 371.3 212 81.6
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.0e-100 370.5 212 81.1
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 1.3e-100 370.2 212 80.7
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 1.7e-100 369.8 209 82.3
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.9e-100 368.6 212 80.2
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 5.0e-100 368.2 212 80.2
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 5.0e-100 368.2 212 79.2
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 8.1e-98 360.9 212 79.2
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.4e-97 360.1 240 72.5
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 3.1e-97 359.0 216 80.1
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 3.1e-97 359.0 242 71.9
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.5e-96 356.7 212 79.2
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 2.6e-96 355.9 189 87.3
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 2.6e-96 355.9 189 87.3
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 7.5e-96 354.4 189 86.2
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 7.5e-96 354.4 272 65.4
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 3.7e-95 352.1 189 85.7
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 4.9e-95 351.7 197 81.7
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.9e-94 349.7 190 83.2
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 3.0e-92 342.4 212 74.5
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.9e-92 342.0 189 83.6
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.9e-91 339.7 209 77.5
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 7.3e-91 337.8 212 73.1
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 1.6e-90 336.7 210 73.3
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 4.7e-90 335.1 216 74.1
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 3.1e-89 332.4 210 71.9
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 5.8e-88 328.2 333 53.2
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 7.6e-88 327.8 187 82.4
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 2.9e-87 325.9 211 71.1
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 3.3e-83 312.4 212 72.2
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 3.1e-81 305.8 370 47.6
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 6.6e-76 288.1 149 87.2
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 4.0e-73 278.9 212 60.8
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 6.6e-68 261.5 211 57.3
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 5.6e-67 258.5 230 52.6
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.4e-62 243.8 215 55.8
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 5.6e-59 231.9 218 50.0
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.8e-58 228.8 114 90.4
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.1e-57 227.6 212 57.5
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 3.1e-57 226.1 114 87.7
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.1e-51 207.6 127 79.5
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.1e-51 207.6 114 82.5
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.0e-44 183.0 217 42.9
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 8.7e-44 181.4 219 40.6
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 1.1e-43 181.0 211 44.1
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.3e-43 179.1 86 89.5
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 5.7e-43 178.7 225 39.6
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 3.1e-41 172.9 243 35.8
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 5.3e-41 172.2 238 37.4
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 9.0e-41 171.4 211 41.7
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.2e-37 161.0 76 89.5
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.6e-37 160.6 210 38.1
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 7.4e-35 151.8 232 35.8
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 5.1e-28 129.0 233 36.9
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 6.3e-18 95.5 55 76.4
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 2.0e-16 90.5 67 65.7
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 2.2e-15 87.0 142 39.4
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 7.2e-14 82.0 49 77.6
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.3e-10 71.2 54 64.8
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 4.1e-09 66.2 33 84.8
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 5.4e-09 65.9 34 76.5
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 7.2e-06 55.5 25 92.0


User provided reference genes

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