Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 1.7e-268 928.7 460 100.0
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 2.7e-237 825.1 461 89.4
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 3.3e-227 791.6 462 86.4
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 5.6e-227 790.8 462 86.1
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 1.6e-226 789.3 462 86.4
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 3.6e-226 788.1 461 86.1
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 6.2e-226 787.3 462 85.9
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 8.1e-226 786.9 459 86.5
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 3.1e-225 785.0 460 85.2
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 1.2e-221 773.1 463 83.6
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 7.9e-221 770.4 461 84.8
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 9.6e-219 763.5 461 84.4
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 2.5e-190 669.1 460 73.5
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 1.2e-160 570.5 457 62.6
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 5.9e-160 568.2 458 62.9
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 1.7e-159 566.6 462 61.9
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 3.2e-158 562.4 455 62.2
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 9.5e-158 560.8 460 62.4
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 5.2e-156 555.1 458 61.1
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 2.6e-155 552.7 452 63.1
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 8.3e-154 547.7 468 58.5
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 1.1e-153 547.4 459 59.9
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 1.4e-153 547.0 456 60.7
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 2.4e-153 546.2 465 60.0
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 4.1e-153 545.4 450 60.9
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 7.0e-153 544.7 461 61.2
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 1.6e-152 543.5 460 59.6
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 3.5e-152 542.3 476 59.2
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 5.9e-152 541.6 460 59.3
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 7.7e-152 541.2 457 59.3
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.0e-151 540.8 460 59.1
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.0e-151 540.8 460 58.9
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 2.9e-151 539.3 466 59.0
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 1.1e-150 537.3 467 60.0
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 1.5e-150 537.0 457 58.6
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 1.5e-150 537.0 457 59.5
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 3.3e-150 535.8 458 59.2
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 4.3e-150 535.4 458 58.3
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 4.3e-150 535.4 468 59.2
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 1.2e-149 533.9 471 58.0
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 1.2e-149 533.9 458 58.7
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 4.7e-149 531.9 464 59.7
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 1.8e-148 530.0 457 60.2
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 1.8e-148 530.0 464 59.3
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 2.3e-148 529.6 473 58.6
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 5.7e-147 525.0 464 59.1
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 5.7e-147 525.0 473 57.9
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 1.7e-146 523.5 477 58.1
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 4.9e-146 521.9 459 58.8
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 4.9e-146 521.9 448 58.7
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 3.2e-145 519.2 433 59.8
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 2.0e-144 516.5 479 55.5
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 2.3e-143 513.1 465 57.6
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 3.9e-143 512.3 463 57.5
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 8.6e-143 511.1 479 55.1
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 2.5e-142 509.6 482 54.8
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 5.6e-142 508.4 474 56.5
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 1.6e-141 506.9 505 53.9
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 1.0e-140 504.2 474 55.3
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 1.5e-139 500.4 493 53.5
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 1.5e-139 500.4 467 55.7
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 2.0e-139 500.0 433 59.1
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 3.4e-139 499.2 397 61.7
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 1.3e-138 497.3 459 55.8
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 1.3e-138 497.3 436 58.5
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 2.2e-138 496.5 470 56.0
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 3.7e-138 495.7 479 55.3
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 8.3e-138 494.6 455 57.1
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 2.4e-137 493.0 559 48.5
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 7.0e-137 491.5 465 55.3
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 2.7e-136 489.6 482 54.1
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 7.8e-136 488.0 479 54.9
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 7.8e-136 488.0 447 58.2
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 1.0e-135 487.6 475 54.7
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 6.6e-135 485.0 465 55.1
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.5e-134 483.0 499 52.1
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 9.5e-134 481.1 474 53.4
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 1.6e-133 480.3 371 66.6
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 2.8e-133 479.6 465 54.6
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 6.8e-132 474.9 516 50.4
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 1.5e-131 473.8 472 54.2
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 6.4e-130 468.4 477 52.2
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 9.2e-129 464.5 388 61.1
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 9.5e-126 454.5 507 49.5
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 1.6e-125 453.8 468 51.3
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 3.6e-125 452.6 449 60.6
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 1.8e-124 450.3 442 53.2
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 2.6e-123 446.4 471 51.4
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 1.9e-121 440.3 381 59.1
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 7.1e-121 438.3 446 51.8
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 1.1e-118 431.0 337 64.1
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 1.7e-114 417.2 362 58.8
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 2.8e-109 399.8 472 49.6
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 9.9e-107 391.3 456 49.6
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 1.7e-106 390.6 470 46.0
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 3.0e-103 379.8 320 59.7
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 6.9e-100 368.6 477 44.2
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 1.2e-99 367.9 462 45.0
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 4.5e-99 365.9 353 54.7
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 4.5e-99 365.9 353 54.7
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 1.2e-91 341.3 461 43.4
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 1.4e-89 334.3 341 51.9
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 9.3e-89 331.6 294 58.8
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 1.3e-87 327.8 259 64.5
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 3.0e-79 300.1 348 44.0
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 3.9e-79 299.7 230 61.7
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 8.5e-74 282.0 235 59.1
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 3.0e-71 273.5 497 35.2
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 4.1e-68 263.1 455 38.7
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 3.2e-65 253.4 160 83.8
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 3.2e-65 253.4 160 83.8
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 2.7e-64 250.4 150 82.0
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 1.4e-63 248.1 350 41.7
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 4.0e-55 219.9 233 51.1
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 6.7e-55 219.2 308 40.9
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 8.2e-53 212.2 174 64.4
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 9.1e-52 208.8 378 38.1
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 3.1e-44 183.7 169 56.2
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 7.0e-44 182.6 223 48.4
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 2.3e-39 167.5 453 29.8
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 6.8e-39 166.0 155 57.4
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 2.4e-36 157.5 161 47.8
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 1.4e-31 141.7 171 47.4
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 8.3e-29 132.5 84 73.8
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 5.2e-23 113.2 393 28.0
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 5.2e-23 113.2 116 52.6
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-16 90.9 105 45.7
Dinv12483 Davidia involucrata HOM05D005933 ORTHO05D007366 7.5e-14 82.8 105 43.8
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.2e-11 75.5 52 71.2
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.6e-11 75.1 67 58.2
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 2.1e-11 74.7 52 71.2
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.3e-10 72.0 91 45.1


User provided reference genes

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