Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 3.2e-225 785.0 484 100.0
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 6.6e-178 627.9 520 77.9
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 2.1e-168 596.3 499 75.8
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 6.9e-159 564.7 502 78.3
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 7.6e-158 561.2 501 71.7
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 1.3e-157 560.5 512 75.4
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 2.9e-157 559.3 501 71.9
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 4.5e-150 535.4 521 69.5
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 4.3e-145 518.8 508 68.1
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 2.0e-142 510.0 500 63.8
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 2.2e-141 506.5 491 71.5
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 5.0e-141 505.4 515 69.3
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 6.5e-141 505.0 491 71.3
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 1.0e-138 497.7 421 74.1
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 1.0e-138 497.7 498 64.9
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 2.3e-138 496.5 503 66.2
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 5.1e-138 495.4 500 63.4
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 5.9e-134 481.9 511 63.6
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 5.9e-134 481.9 511 63.6
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 9.7e-129 464.5 504 62.7
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 1.7e-125 453.8 512 60.5
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 2.9e-125 453.0 503 63.2
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 2.5e-124 449.9 429 61.1
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 4.2e-124 449.1 426 62.4
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 7.2e-124 448.4 387 69.8
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 1.6e-123 447.2 317 74.8
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 3.6e-123 446.0 513 59.5
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 6.1e-123 445.3 502 59.6
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 1.4e-122 444.1 516 60.5
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 2.3e-122 443.4 517 60.0
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 2.3e-122 443.4 434 64.1
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 3.0e-122 443.0 509 60.3
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 3.0e-122 443.0 503 62.6
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 5.2e-122 442.2 434 63.6
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 1.1e-121 441.0 433 64.0
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 2.0e-121 440.3 428 64.3
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 2.0e-121 440.3 501 61.5
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 9.7e-121 438.0 498 59.2
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 1.7e-120 437.2 498 57.6
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 2.2e-120 436.8 486 63.4
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 6.3e-120 435.3 481 62.2
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 1.1e-119 434.5 502 61.6
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 2.4e-119 433.3 521 60.1
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 5.3e-119 432.2 421 63.7
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 9.1e-119 431.4 441 58.0
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 3.5e-118 429.5 516 58.3
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 5.9e-118 428.7 510 57.1
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 5.9e-118 428.7 402 61.9
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 1.7e-117 427.2 548 59.9
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 1.7e-117 427.2 502 62.2
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 1.7e-117 427.2 526 57.4
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 3.8e-117 426.0 512 62.5
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 5.0e-117 425.6 528 58.3
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 6.5e-117 425.2 441 60.3
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 1.5e-116 424.1 418 63.9
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 4.2e-116 422.5 317 70.0
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 7.2e-116 421.8 387 69.5
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.2e-115 421.0 315 71.1
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 2.7e-115 419.9 318 71.4
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 6.1e-115 418.7 430 63.3
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.3e-114 416.8 528 60.2
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 5.2e-114 415.6 517 60.5
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.0e-113 413.7 528 59.8
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 5.7e-113 412.1 504 61.9
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 7.5e-113 411.8 510 58.4
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 9.7e-113 411.4 428 59.3
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 1.7e-112 410.6 422 60.7
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 2.2e-112 410.2 510 61.0
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.7e-112 409.5 407 63.9
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 1.4e-111 407.5 555 58.7
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 1.8e-111 407.1 432 60.0
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 3.1e-111 406.4 377 69.2
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 3.1e-111 406.4 315 69.5
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 1.6e-110 404.1 387 68.7
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 4.5e-110 402.5 485 52.2
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 5.9e-110 402.1 436 58.7
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.3e-109 401.0 539 57.7
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 2.2e-109 400.2 542 56.6
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 1.1e-108 397.9 516 54.3
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 7.2e-108 395.2 387 63.8
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 1.4e-106 391.0 505 57.2
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 2.3e-106 390.2 504 57.9
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 5.2e-106 389.0 448 53.6
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 7.5e-105 385.2 452 53.8
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 1.7e-104 384.0 401 62.6
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 4.8e-104 382.5 404 59.2
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 3.1e-103 379.8 510 54.9
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 4.1e-103 379.4 289 71.3
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 5.9e-102 375.6 384 57.0
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 5.9e-102 375.6 516 53.1
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 2.9e-101 373.2 297 69.7
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.1e-100 371.3 285 73.0
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 2.8e-99 366.7 399 58.4
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 2.8e-99 366.7 367 68.7
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 6.8e-98 362.1 411 54.7
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 1.2e-97 361.3 299 64.9
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 3.4e-97 359.8 330 62.7
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 2.2e-96 357.1 389 59.4
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.1e-95 353.2 284 70.1
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.0e-93 348.2 657 42.6
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 8.6e-93 345.1 420 55.5
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.6e-91 340.9 395 58.5
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 6.1e-91 339.0 395 50.4
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 4.4e-89 332.8 369 56.9
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 6.2e-83 312.4 312 65.7
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 1.5e-81 307.8 247 68.8
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 2.0e-81 307.4 255 63.9
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 2.6e-81 307.0 315 53.0
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 5.8e-81 305.8 426 51.4
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 8.3e-80 302.0 367 57.8
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.9e-79 300.8 365 56.7
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 6.8e-74 282.3 271 62.4
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 6.4e-72 275.8 299 52.5
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 2.8e-67 260.4 416 42.3
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 4.9e-64 249.6 410 39.5
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 2.0e-57 227.6 396 43.7
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 4.4e-57 226.5 233 55.4
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 8.4e-56 222.2 222 59.0
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 2.4e-55 220.7 202 55.4
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 2.1e-51 207.6 287 43.6
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.2e-49 201.8 283 43.1
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 6.9e-42 176.0 299 38.1
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 5.6e-36 156.4 119 71.4
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 1.3e-27 128.6 197 46.7
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 5.9e-25 119.8 72 81.9
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 1.3e-24 118.6 139 54.0
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 6.5e-24 116.3 139 53.2
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 6.5e-24 116.3 139 53.2
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 4.7e-14 83.6 259 25.5
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 1.0e-13 82.4 153 46.4
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 1.1e-12 79.0 65 67.7
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 1.1e-12 79.0 65 67.7
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 1.1e-12 79.0 65 67.7
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 3.1e-10 70.9 112 47.3
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 7.7e-09 66.2 66 63.6
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 2.9e-08 64.3 299 24.1
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 5.0e-08 63.5 91 37.4


User provided reference genes

Program Settings