Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.9e-291 1004.6 543 100.0
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 5.3e-192 674.9 609 68.1
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 1.8e-171 606.7 611 61.4
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 3.0e-171 605.9 580 65.2
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.5e-170 603.6 658 58.5
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 6.3e-169 598.2 593 63.1
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 7.0e-168 594.7 590 63.1
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 4.5e-167 592.0 593 63.1
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 7.2e-165 584.7 610 61.6
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 2.3e-163 579.7 594 62.1
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 1.5e-162 577.0 601 60.2
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 6.4e-97 359.0 648 44.6
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 6.0e-95 352.4 642 42.2
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.1e-93 348.2 657 43.7
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 3.3e-93 346.7 635 43.9
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.2e-92 342.4 642 43.3
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 5.8e-90 335.9 606 42.9
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 2.1e-87 327.4 620 43.7
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 2.1e-87 327.4 620 43.7
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 3.5e-87 326.6 628 43.0
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 1.9e-85 320.9 586 44.5
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 6.3e-84 315.8 612 42.3
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 8.7e-78 295.4 721 38.3
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 1.0e-70 271.9 633 38.4
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 3.0e-70 270.4 651 37.9
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 1.7e-68 264.6 716 36.7
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 5.3e-67 259.6 693 36.5
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 2.6e-66 257.3 684 36.7
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.9e-66 256.1 631 37.6
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 3.2e-64 250.4 677 36.3
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 2.8e-60 237.3 504 42.5
CARHR265290 Cardamine hirsuta HOM05D004189 ORTHO05D004092 5.9e-50 203.0 792 32.8
Carub.0008s1241 Capsella rubella HOM05D004189 ORTHO05D004092 8.0e-47 192.6 739 31.5
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 3.0e-46 190.7 688 30.5
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 9.8e-45 185.7 713 30.4
BcaB05g21947 Brassica carinata HOM05D004189 ORTHO05D004092 4.4e-37 160.2 641 31.4
BcaC03g14535 Brassica carinata HOM05D004189 ORTHO05D004092 9.8e-37 159.1 648 30.2
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 8.3e-36 156.0 275 43.3
C02p19870 Brassica napus HOM05D004189 ORTHO05D004092 8.3e-36 156.0 654 29.4
BolC2t08122H Brassica oleracea HOM05D004189 ORTHO05D004092 8.3e-36 156.0 654 29.4
AT5G52310 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 2.4e-35 154.5 700 30.6
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.4e-35 154.5 595 33.3
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.7e-34 151.0 608 32.9
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.9e-33 147.5 640 29.5
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 6.6e-33 146.4 742 27.9
A02p11890 Brassica napus HOM05D004189 ORTHO05D004092 2.5e-32 144.4 609 31.2
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.2e-31 142.1 546 31.3
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 3.0e-30 137.5 597 32.5
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 3.0e-30 137.5 634 31.4
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 6.8e-30 136.3 640 30.3
BolC8t48624H Brassica oleracea HOM05D004189 ORTHO05D004092 3.4e-29 134.0 217 45.6
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 4.1e-27 127.1 348 33.9
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 9.2e-27 125.9 610 27.5
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 4.6e-26 123.6 854 25.9
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 1.3e-25 122.1 620 29.8
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 2.3e-25 121.3 634 30.0
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.5e-24 118.6 475 30.1
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.5e-24 118.6 390 30.5
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 4.3e-24 117.1 506 30.2
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 9.5e-24 115.9 346 33.5
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 9.5e-24 115.9 600 27.3
BcaC07g38200 Brassica carinata HOM05D004189 ORTHO05D004092 2.1e-23 114.8 217 42.4
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.1e-23 114.8 371 31.8
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.1e-23 114.8 397 30.0
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 2.8e-23 114.4 443 30.2
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.4e-22 112.1 361 31.9
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.3e-22 111.3 444 29.3
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 2.3e-22 111.3 403 31.3
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 4.0e-22 110.5 374 31.0
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 8.9e-22 109.4 366 32.0
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 2.0e-21 108.2 676 26.2
BcaB03g12476 Brassica carinata HOM05D002154 ORTHO05D002362 5.8e-21 106.7 117 56.4
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 2.9e-20 104.4 409 29.6
BolC2t10446H Brassica oleracea HOM05D026065 ORTHO05D019960 6.4e-20 103.2 216 44.4
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 1.1e-19 102.4 644 26.4
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.9e-19 101.7 688 26.5
C08p09550 Brassica napus HOM05D002154 ORTHO05D002362 3.2e-19 100.9 192 41.7
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 3.2e-19 100.9 570 27.7
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 4.1e-19 100.5 649 28.2
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 9.2e-19 99.4 614 28.0
BraA08t34059Z Brassica rapa HOM05D002154 ORTHO05D002362 1.2e-18 99.0 134 49.3
A08p21090 Brassica napus HOM05D002154 ORTHO05D002362 2.0e-18 98.2 134 49.3
BolC3t14506H Brassica oleracea HOM05D026065 ORTHO05D019960 1.3e-17 95.5 215 42.8
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 3.0e-17 94.4 503 27.8
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.0e-17 94.4 573 25.3
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 5.0e-17 93.6 563 28.2
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 5.0e-17 93.6 349 30.7
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 1.1e-16 92.4 369 29.8
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.9e-16 91.7 527 26.9
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.9e-16 91.7 568 26.8
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.9e-16 91.7 626 27.5
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.3e-16 90.9 352 30.1
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 4.3e-16 90.5 672 27.5
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 2.1e-15 88.2 261 33.0
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.8e-15 87.8 351 28.2
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 8.1e-15 86.3 490 27.8
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.1e-14 85.9 280 33.6
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 6.8e-14 83.2 631 26.6
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 1.2e-13 82.4 449 25.4
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.2e-13 82.4 666 26.4
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.5e-13 82.0 535 28.0
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 2.0e-13 81.6 266 33.8
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 3.4e-13 80.9 127 41.7
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 9.8e-13 79.3 641 25.1
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 9.8e-13 79.3 383 27.4
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 1.3e-12 79.0 311 28.0
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.3e-12 79.0 248 33.1
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.7e-12 78.6 379 26.9
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 2.9e-12 77.8 415 25.8
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 4.9e-12 77.0 396 27.5
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 4.9e-12 77.0 518 26.4
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 6.4e-12 76.6 187 35.3
AL271U10030 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 8.3e-12 76.3 299 32.4
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 8.3e-12 76.3 197 35.0
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.1e-11 75.9 370 29.2
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.1e-11 75.9 576 26.0
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.1e-11 75.9 186 36.6
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.4e-11 75.5 228 34.6
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.4e-11 75.5 657 26.2
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.9e-11 75.1 547 26.0
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 3.2e-11 74.3 285 31.6
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 4.1e-11 73.9 411 25.8
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 7.1e-11 73.2 536 25.0
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 1.2e-10 72.4 393 26.7
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 2.1e-10 71.6 187 33.7
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 2.1e-10 71.6 285 29.8
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 6.0e-10 70.1 259 32.0
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 7.8e-10 69.7 219 30.6
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 1.0e-09 69.3 624 25.5
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.0e-09 69.3 249 30.1
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 3.0e-09 67.8 223 29.1
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 5.1e-09 67.0 296 26.4
BcaB06g26292 Brassica carinata HOM05D023865 ORTHO05D019960 6.6e-09 66.6 133 41.4
BcaNung06066 Brassica carinata HOM05D023865 ORTHO05D019960 6.6e-09 66.6 133 41.4
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 1.1e-08 65.9 323 27.9
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 1.5e-08 65.5 551 26.7
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.9e-08 65.1 500 25.8
CARHR119590 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.5e-08 64.7 123 39.8
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 4.3e-08 63.9 157 32.5
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 5.6e-08 63.5 400 24.2
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 7.3e-08 63.2 400 24.5
CARHR259130 Cardamine hirsuta HOM05D004189 ORTHO05D004092 7.3e-08 63.2 82 48.8
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.5e-08 62.8 190 35.8
BolC3t17948H Brassica oleracea HOM05D031036 ORTHO05D032614 1.2e-07 62.4 40 80.0
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 1.6e-07 62.0 181 33.7
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 2.1e-07 61.6 226 31.0
C02p41180 Brassica napus HOM05D031036 ORTHO05D032684 2.8e-07 61.2 40 77.5
BcaC01g02896 Brassica carinata HOM05D017572 ORTHO05D004092 6.2e-07 60.1 162 34.6
BcaC03g13799 Brassica carinata HOM05D023865 ORTHO05D032684 6.2e-07 60.1 40 77.5
BolC2t07072H Brassica oleracea HOM05D023865 ORTHO05D032684 6.2e-07 60.1 40 77.5
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 6.2e-07 60.1 516 23.4
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 6.2e-07 60.1 142 35.2
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 8.1e-07 59.7 154 33.1
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 8.1e-07 59.7 95 42.1
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.4e-06 58.9 553 25.5
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 2.3e-06 58.2 186 32.3
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 4.0e-06 57.4 182 31.3
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 4.0e-06 57.4 322 24.8
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 5.2e-06 57.0 186 33.3
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 5.2e-06 57.0 150 34.0
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 8.9e-06 56.2 173 34.1
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.9e-06 56.2 185 31.4


User provided reference genes

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