Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 9.0e-304 1046.2 558 100.0
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 7.5e-226 787.3 479 86.4
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 7.0e-224 780.8 472 86.0
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 3.9e-222 775.0 474 84.0
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 2.8e-220 768.8 478 86.4
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.7e-212 741.5 476 83.2
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 2.1e-207 726.1 482 82.2
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 3.1e-195 685.6 482 74.5
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.4e-192 676.8 481 77.3
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 1.4e-192 676.8 481 77.3
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 4.8e-188 661.8 481 76.3
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 3.4e-186 655.6 481 76.5
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 4.5e-186 655.2 481 75.1
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 2.7e-183 646.0 480 75.2
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.4e-179 633.6 479 72.9
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 4.0e-179 632.1 475 70.1
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 3.8e-177 625.5 474 72.6
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.0e-174 617.5 483 67.7
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 3.3e-173 612.5 474 70.3
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 3.7e-172 609.0 482 71.4
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 4.2e-168 595.5 474 71.5
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 2.1e-167 593.2 464 72.8
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 3.6e-167 592.4 474 68.6
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.8e-164 582.8 476 67.0
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 3.7e-164 582.4 467 67.2
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.8e-164 582.0 476 67.2
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 6.3e-164 581.6 483 65.8
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 3.1e-163 579.3 495 64.8
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 6.9e-163 578.2 476 67.0
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 9.1e-163 577.8 482 63.7
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.0e-162 576.6 474 65.8
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 2.6e-162 576.2 477 66.2
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.4e-162 575.9 472 65.3
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 4.5e-162 575.5 490 64.3
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.1e-160 570.9 489 67.3
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 4.2e-160 568.9 490 67.1
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 5.5e-160 568.5 478 64.6
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 2.3e-158 563.1 511 63.0
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 3.0e-158 562.8 486 64.4
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.7e-156 557.0 498 62.0
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 2.2e-156 556.6 479 63.3
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 2.8e-156 556.2 478 63.0
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 2.8e-156 556.2 479 62.8
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 2.8e-156 556.2 489 63.4
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 3.7e-156 555.8 477 65.2
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 8.2e-156 554.7 480 62.9
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 8.2e-156 554.7 479 62.6
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 3.1e-155 552.7 501 62.1
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 1.2e-154 550.8 485 63.9
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 1.5e-154 550.4 389 72.5
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 7.7e-154 548.1 480 65.4
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 1.0e-153 547.7 511 61.4
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 2.2e-153 546.6 480 60.6
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 5.0e-153 545.4 502 63.5
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 5.0e-153 545.4 454 65.0
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 1.9e-152 543.5 480 60.6
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 4.2e-152 542.3 470 65.3
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 5.5e-152 542.0 472 62.1
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 1.6e-151 540.4 464 62.5
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 2.1e-151 540.0 496 62.1
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 3.6e-151 539.3 478 62.3
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 8.0e-151 538.1 435 66.4
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 1.4e-150 537.3 485 62.5
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.3e-150 536.6 480 62.1
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 3.9e-150 535.8 494 62.6
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 6.7e-150 535.0 478 61.5
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.5e-149 533.9 476 62.4
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.5e-149 533.9 485 62.5
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 2.0e-149 533.5 481 61.5
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.3e-149 532.7 508 60.2
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 4.4e-149 532.3 477 62.9
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 5.7e-149 531.9 478 61.5
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 1.7e-148 530.4 486 60.7
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 2.2e-148 530.0 516 58.7
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 2.2e-148 530.0 486 63.4
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 4.8e-148 528.9 489 61.6
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 4.8e-148 528.9 488 61.1
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 4.8e-148 528.9 489 60.3
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 6.3e-148 528.5 473 63.2
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 8.2e-148 528.1 483 64.4
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.8e-147 526.9 457 64.6
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 2.4e-147 526.6 479 61.8
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 4.1e-147 525.8 486 61.3
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 3.5e-146 522.7 499 59.9
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 4.5e-146 522.3 487 60.6
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 1.0e-145 521.2 497 60.8
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 1.7e-145 520.4 504 62.5
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.2e-145 520.0 475 61.9
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 2.2e-145 520.0 393 70.2
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 1.5e-144 517.3 485 62.5
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 1.9e-144 516.9 475 60.2
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.2e-144 516.2 499 61.7
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 3.2e-144 516.2 496 60.3
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 5.5e-144 515.4 485 62.3
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 9.4e-144 514.6 480 61.0
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 9.4e-144 514.6 477 58.9
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.2e-143 514.2 481 60.3
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 2.1e-143 513.5 471 59.4
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 4.7e-143 512.3 387 70.0
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 8.0e-143 511.5 481 61.3
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 1.0e-142 511.1 473 61.5
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.0e-142 511.1 473 61.5
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 1.4e-142 510.8 482 61.0
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 1.4e-142 510.8 485 63.3
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.4e-142 510.8 474 62.2
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 1.4e-142 510.8 512 56.4
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.5e-141 507.3 491 58.0
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 3.4e-141 506.1 484 59.9
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 5.7e-141 505.4 490 57.6
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 5.7e-141 505.4 486 58.4
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 2.2e-140 503.4 483 60.2
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.2e-140 503.4 467 58.5
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 4.8e-140 502.3 479 59.7
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 6.3e-140 501.9 482 60.8
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 6.3e-140 501.9 474 59.5
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.4e-139 500.7 500 60.6
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 2.4e-139 500.0 423 63.6
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 7.0e-139 498.4 489 61.3
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 7.0e-139 498.4 476 59.2
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.6e-138 497.3 389 67.1
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.0e-138 496.9 487 59.1
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 5.9e-138 495.4 489 63.2
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.0e-137 494.6 472 57.6
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 1.5e-136 490.7 497 56.5
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.2e-135 487.6 495 54.5
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 2.1e-135 486.9 280 86.1
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 4.7e-135 485.7 489 56.9
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.4e-134 484.2 476 59.2
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 4.4e-133 479.2 381 64.0
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 4.4e-133 479.2 384 64.3
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 3.7e-132 476.1 488 55.7
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 7.0e-131 471.9 456 57.7
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 8.6e-129 464.9 458 56.6
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.5e-128 464.2 422 59.7
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 7.2e-128 461.8 429 60.6
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 1.6e-127 460.7 489 54.0
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 4.7e-127 459.1 316 72.8
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 2.3e-126 456.8 480 57.7
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 3.0e-126 456.4 504 53.4
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 1.0e-121 441.4 481 53.0
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.8e-119 433.3 392 60.7
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 6.2e-119 432.2 448 56.9
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 1.9e-115 420.6 463 54.2
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 5.0e-113 412.5 467 50.5
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 8.6e-113 411.8 427 58.5
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 9.5e-112 408.3 386 56.7
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 1.2e-111 407.9 468 50.9
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 1.5e-101 374.4 382 54.2
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 4.7e-95 352.8 473 48.8
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 3.2e-91 340.1 388 47.7
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.2e-83 313.5 349 49.6
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 1.0e-68 265.4 191 73.3
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 9.0e-62 242.3 333 48.6
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.1e-59 235.3 340 40.9
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.1e-59 235.3 361 41.3
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 5.9e-53 213.0 195 62.1
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.4e-49 201.8 201 54.2
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.8e-44 183.7 137 73.7
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 6.5e-44 183.0 145 71.0
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 9.4e-43 179.1 147 66.0
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.3e-40 170.6 129 72.9
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 9.1e-38 162.5 129 69.0
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 3.5e-37 160.6 117 64.1
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 2.5e-35 154.5 341 35.8
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 5.5e-35 153.3 314 37.3
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 8.2e-31 139.4 98 65.3
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.1e-27 129.0 99 64.6
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 4.0e-25 120.6 316 32.6
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 2.4e-22 111.3 343 30.9
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 4.1e-22 110.5 133 42.9
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 4.1e-22 110.5 133 42.9
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 6.3e-15 86.7 69 50.7
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 2.4e-14 84.7 110 55.5
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 2.1e-10 71.6 47 68.1
Cfa000173 Carpinus fangiana HOM05D000321 ORTHO05D000204 3.0e-09 67.8 126 49.2
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 6.8e-09 66.6 53 62.3


User provided reference genes

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