Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 0.0e+00 1155.6 645 100.0
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 9.7e-302 1039.6 647 91.2
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 4.1e-300 1034.2 648 89.5
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.2e-298 1028.5 647 90.4
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 3.8e-298 1027.7 645 90.5
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 6.5e-298 1026.9 647 90.1
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 1.5e-289 999.2 647 84.1
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 1.4e-287 992.6 655 85.5
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 6.8e-287 990.3 652 87.1
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 6.8e-287 990.3 652 87.1
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 2.2e-277 958.7 650 82.8
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 1.8e-276 955.7 653 84.5
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 9.5e-273 943.3 649 83.7
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 2.5e-265 918.7 661 80.2
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 1.8e-263 912.5 654 80.4
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.6e-256 889.4 653 78.9
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 9.9e-238 827.0 666 72.8
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 2.3e-226 789.3 663 69.1
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 1.2e-222 776.9 661 68.2
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 5.8e-222 774.6 658 67.3
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 2.2e-221 772.7 662 66.9
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 4.2e-220 768.5 663 67.6
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 7.9e-219 764.2 663 65.9
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.3e-218 763.5 661 66.4
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 5.1e-218 761.5 665 67.8
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.9e-217 759.6 665 65.9
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 1.9e-217 759.6 658 65.2
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 2.1e-216 756.1 661 66.6
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.1e-215 752.3 665 65.6
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 4.1e-215 751.9 665 65.7
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 6.9e-215 751.1 660 66.2
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.5e-214 750.0 659 66.0
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 2.0e-214 749.6 662 65.4
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 3.4e-214 748.8 664 64.9
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 5.9e-214 748.0 662 65.9
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.7e-213 746.5 663 65.2
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.1e-212 743.8 661 64.9
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.9e-212 743.0 658 64.6
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.1e-211 739.6 659 65.6
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 2.1e-211 739.6 659 65.4
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.1e-211 738.0 659 65.6
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 6.1e-211 738.0 658 64.6
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.8e-210 736.5 671 63.5
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 2.5e-209 732.6 659 64.6
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 5.7e-209 731.5 665 64.7
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 7.4e-209 731.1 659 65.3
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 9.7e-209 730.7 662 64.0
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 9.7e-209 730.7 663 64.1
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 9.7e-209 730.7 660 64.8
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.3e-208 730.3 659 64.8
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 8.2e-208 727.6 666 64.0
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.4e-206 722.2 662 64.0
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.2e-205 719.5 659 64.6
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 5.0e-205 718.4 659 63.1
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 1.0e-202 710.7 661 65.2
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 1.0e-202 710.7 661 65.2
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 1.0e-202 710.7 660 64.1
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 8.8e-202 707.6 661 63.8
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 8.8e-202 707.6 658 63.2
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 1.1e-201 707.2 659 61.6
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 5.3e-199 698.4 653 60.8
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 3.4e-198 695.7 669 62.2
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 4.5e-198 695.3 638 62.2
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 7.9e-195 684.5 658 63.5
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 3.3e-193 679.1 673 63.4
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 1.7e-192 676.8 656 60.2
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.8e-191 673.3 667 61.0
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 9.1e-191 671.0 665 62.3
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 1.0e-189 667.5 660 61.5
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 6.5e-189 664.8 649 59.9
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.1e-188 664.1 668 62.6
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.1e-187 659.8 668 62.4
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 2.1e-187 659.8 660 58.3
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 2.7e-187 659.4 659 58.3
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 4.7e-187 658.7 654 62.8
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 8.0e-187 657.9 657 62.1
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 1.8e-186 656.8 654 63.0
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.0e-186 656.0 660 57.6
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 4.0e-186 655.6 654 58.0
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-185 654.1 659 58.0
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.6e-185 652.9 651 61.0
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.6e-185 652.9 658 57.3
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.4e-185 652.1 650 60.8
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 9.7e-185 651.0 658 60.0
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 4.8e-184 648.7 651 61.0
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 2.4e-183 646.4 654 57.8
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.3e-183 645.2 659 57.4
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 9.1e-183 644.4 662 59.8
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 1.7e-181 640.2 654 59.6
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 8.5e-181 637.9 660 59.5
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 2.5e-180 636.3 656 59.6
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.2e-180 636.0 654 56.4
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 4.7e-179 632.1 653 59.7
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 3.4e-177 625.9 660 57.7
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 4.8e-176 622.1 665 55.6
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.1e-175 620.9 657 55.7
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.1e-175 620.9 663 59.9
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.8e-175 620.2 545 65.3
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.8e-175 620.2 545 65.3
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 5.4e-175 618.6 653 55.4
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 7.0e-175 618.2 653 55.3
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 1.6e-174 617.1 650 58.2
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 5.9e-174 615.1 653 58.0
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 5.9e-174 615.1 668 54.3
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 1.3e-173 614.0 651 57.3
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.7e-173 613.6 661 56.6
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.2e-172 609.4 654 57.6
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 9.5e-172 607.8 613 59.7
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 6.1e-171 605.1 665 54.0
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.0e-170 604.4 665 53.8
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.0e-170 604.4 669 53.7
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 4.0e-170 602.4 652 61.0
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 5.2e-170 602.1 649 55.0
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 8.8e-170 601.3 540 64.3
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 4.4e-169 599.0 421 82.4
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.8e-168 596.3 659 54.3
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 4.9e-168 595.5 661 55.2
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 1.8e-167 593.6 656 54.9
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 7.0e-167 591.7 662 56.8
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 4.5e-166 589.0 663 56.1
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.3e-165 587.4 672 52.8
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 1.7e-165 587.0 653 57.1
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 2.9e-165 586.3 658 56.2
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 3.8e-165 585.9 659 53.4
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.9e-164 583.6 654 54.1
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 5.6e-164 582.0 655 54.2
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 3.0e-162 576.2 649 54.4
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.0e-162 576.2 650 52.9
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 8.9e-162 574.7 670 55.2
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.8e-159 567.0 661 53.3
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.2e-158 564.3 679 53.6
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.0e-158 563.5 653 55.4
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.7e-157 560.5 653 53.1
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 5.0e-157 558.9 674 51.3
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.6e-157 558.5 646 54.5
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 2.1e-155 553.5 556 58.6
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 2.0e-153 547.0 672 50.9
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 2.0e-153 547.0 678 50.4
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 2.9e-152 543.1 653 50.5
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.3e-149 533.5 654 49.2
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 1.5e-148 530.8 659 52.2
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 6.2e-147 525.4 657 54.3
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 4.9e-144 515.8 659 50.2
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 8.6e-141 505.0 671 49.2
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 1.6e-139 500.7 533 56.1
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.7e-136 490.7 623 53.9
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 6.0e-134 482.3 661 49.5
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 8.6e-133 478.4 659 49.5
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.5e-132 477.6 614 51.6
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 9.6e-132 474.9 533 58.7
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 3.1e-122 443.4 616 47.7
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 2.1e-118 430.6 400 63.2
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.3e-117 427.9 656 44.5
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 4.3e-116 422.9 401 61.8
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 3.1e-114 416.8 402 61.4
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.8e-109 401.0 664 43.5
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 2.5e-87 327.4 310 59.4
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 7.2e-87 325.9 658 40.3
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.2e-83 314.3 552 42.2
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.0e-69 267.3 226 65.9
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.8e-67 260.8 432 40.3
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 8.8e-61 239.2 645 34.7
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 6.3e-59 233.0 624 34.8
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 1.6e-46 191.8 268 43.3
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.0e-37 160.6 223 55.6
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 9.2e-34 149.4 112 62.5
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.9e-26 125.2 106 56.6
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 3.9e-24 117.5 77 72.7
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 6.6e-24 116.7 150 48.0
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 1.3e-19 102.4 79 62.0
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 1.3e-19 102.4 125 51.2
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 3.8e-19 100.9 135 39.3
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 5.1e-16 90.5 78 62.8
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.2e-14 85.9 58 65.5
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.6e-14 85.5 74 55.4
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 1.7e-11 75.5 60 61.7
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.1e-10 72.8 310 25.5
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.6e-09 68.9 585 21.2
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 1.9e-07 62.0 75 57.3
SEGI_28495 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.6e-06 58.9 70 52.9


User provided reference genes

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