Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 0.0e+00 1300.8 933 100.0
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 0.0e+00 1084.7 936 82.2
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 1.6e-292 1009.6 940 77.7
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 2.7e-292 1008.8 938 76.7
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.1e-282 976.9 936 73.3
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 1.4e-280 969.9 940 74.3
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 1.2e-276 956.8 941 74.2
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 1.3e-275 953.4 930 73.7
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 1.2e-273 946.8 941 73.5
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 3.1e-272 942.2 938 72.5
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 4.1e-269 931.8 932 70.6
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 4.1e-269 931.8 932 70.6
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 1.1e-264 917.1 963 68.4
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 2.3e-251 872.8 933 71.6
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.8e-248 863.2 968 71.2
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 2.4e-248 862.8 777 76.6
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 1.9e-242 843.2 762 80.2
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.3e-194 682.9 962 59.9
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 1.1e-184 651.4 861 61.8
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 2.6e-162 577.0 899 50.8
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 2.2e-161 573.9 570 76.8
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 4.6e-159 566.2 989 50.8
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 7.3e-157 558.9 963 55.0
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 1.1e-155 555.1 975 56.0
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 1.9e-152 544.3 866 46.2
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 3.0e-150 537.0 895 53.4
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 6.6e-150 535.8 890 50.3
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.3e-149 533.5 894 55.4
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 5.6e-149 532.7 958 53.9
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 7.3e-149 532.3 891 57.8
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 9.5e-149 531.9 897 54.2
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 9.5e-149 531.9 901 56.4
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 5.8e-146 522.7 907 56.6
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 6.4e-145 519.2 798 58.4
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 8.4e-145 518.8 842 53.0
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 3.5e-143 513.5 904 52.9
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 1.5e-141 508.1 916 53.4
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 2.5e-141 507.3 891 54.2
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 4.3e-141 506.5 997 51.4
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 5.6e-141 506.1 875 50.9
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 7.1e-136 489.2 941 49.3
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 4.6e-135 486.5 1014 46.6
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.0e-134 485.3 914 51.4
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 5.1e-134 483.0 801 51.7
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 1.1e-133 481.9 909 52.4
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 1.9e-133 481.1 780 55.9
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 2.5e-133 480.7 897 52.3
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 3.3e-133 480.3 789 56.1
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 5.6e-133 479.6 930 51.1
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 7.3e-133 479.2 902 50.1
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 1.6e-132 478.0 963 49.8
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.1e-132 477.6 850 55.2
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 4.0e-131 473.4 895 55.1
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 4.0e-131 473.4 804 56.7
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 2.0e-130 471.1 801 53.2
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 4.5e-130 469.9 927 51.3
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 1.7e-129 468.0 804 49.9
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 2.9e-129 467.2 801 52.6
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 4.9e-129 466.5 907 50.7
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 4.9e-129 466.5 847 49.2
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 1.9e-128 464.5 899 47.4
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 7.1e-128 462.6 905 49.7
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 9.3e-128 462.2 958 50.3
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 1.6e-127 461.5 784 54.5
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 6.0e-127 459.5 789 53.4
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 7.9e-127 459.1 1084 44.6
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 3.0e-126 457.2 906 47.0
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 7.4e-125 452.6 899 48.1
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 9.6e-125 452.2 786 53.3
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 2.1e-124 451.1 797 50.8
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 2.1e-124 451.1 839 49.3
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 3.6e-124 450.3 789 53.7
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 3.6e-124 450.3 864 50.8
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 6.2e-124 449.5 885 46.8
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 1.8e-123 448.0 756 54.5
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 2.4e-123 447.6 787 56.5
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 1.2e-122 445.3 903 48.3
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 2.2e-121 441.0 784 52.7
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 2.2e-121 441.0 908 43.8
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 2.2e-121 441.0 916 49.8
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 6.4e-121 439.5 789 53.0
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 8.4e-121 439.1 838 48.3
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 1.9e-120 438.0 942 42.5
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 7.1e-120 436.0 789 52.5
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 2.1e-119 434.5 882 48.6
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 3.5e-119 433.7 841 48.3
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 6.7e-118 429.5 800 45.5
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.1e-117 428.7 784 52.8
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 1.5e-117 428.3 782 53.5
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 1.9e-117 427.9 822 48.2
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 2.5e-117 427.6 806 53.0
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 7.4e-117 426.0 845 48.8
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 9.6e-117 425.6 905 45.7
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 6.2e-116 422.9 786 53.2
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 5.3e-115 419.9 847 52.8
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 5.8e-114 416.4 895 49.6
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 1.0e-113 415.6 718 54.5
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 6.5e-113 412.9 929 44.0
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 1.4e-112 411.8 764 47.0
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 1.4e-112 411.8 827 54.5
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 2.5e-112 411.0 939 44.4
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 2.7e-111 407.5 928 49.0
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 1.1e-109 402.1 761 51.0
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.1e-109 402.1 847 45.8
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 2.8e-108 397.5 793 53.8
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 4.5e-106 390.2 856 49.6
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 1.7e-105 388.3 795 51.6
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 1.4e-104 385.2 893 37.4
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 6.9e-99 366.3 736 43.8
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 6.9e-99 366.3 861 42.9
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 3.4e-98 364.0 796 43.2
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 2.7e-95 354.4 864 50.1
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 3.3e-93 347.4 804 47.6
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.6e-87 328.6 797 49.8
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 4.5e-82 310.5 901 43.3
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 2.7e-79 301.2 844 48.6
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 2.6e-77 294.7 777 36.8
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.4e-75 288.9 913 43.6
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 4.5e-74 283.9 773 48.9
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 2.0e-69 268.5 848 44.2
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 2.7e-66 258.1 636 47.3
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 1.9e-64 251.9 764 41.0
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 8.8e-62 243.0 283 50.5
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 2.2e-60 238.4 284 51.4
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 1.6e-55 222.2 332 47.6
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 2.3e-54 218.4 268 51.1
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 5.7e-53 213.8 293 45.1
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.6e-47 195.7 372 40.1
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 4.9e-44 184.1 819 36.0
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 1.6e-42 179.1 243 52.7
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.7e-42 178.3 324 42.0
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.3e-41 175.3 231 47.2
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 5.0e-41 174.1 292 49.3
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 1.1e-30 139.8 82 80.5
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 8.4e-28 130.2 131 53.4
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 6.6e-25 120.6 71 83.1
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 6.2e-23 114.0 77 76.6
Sp6g02640 Schrenkiella parvula HOM05D004873 ORTHO05D006122 1.9e-19 102.4 131 51.1
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 4.2e-19 101.3 192 40.1
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 6.0e-18 97.4 91 46.2
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 3.4e-13 81.6 88 53.4
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 9.9e-13 80.1 142 38.7
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 2.2e-12 79.0 95 43.2
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 2.9e-12 78.6 141 38.3
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.1e-11 76.6 131 38.2
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 1.1e-11 76.6 101 40.6
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 2.1e-10 72.4 178 33.1
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 6.9e-06 57.4 88 45.5


User provided reference genes

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