Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 2.3e-69 265.4 131 100.0
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 9.8e-60 233.4 129 86.0
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 9.8e-60 233.4 130 85.4
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 2.2e-59 232.3 129 86.8
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 2.4e-58 228.8 129 85.3
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 1.6e-57 226.1 128 82.0
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 1.1e-55 219.9 126 81.7
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 1.2e-54 216.5 129 78.3
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 4.7e-54 214.5 129 77.5
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 4.7e-54 214.5 129 78.3
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 6.2e-54 214.2 129 76.7
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.4e-53 213.0 129 76.7
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 6.8e-53 210.7 126 77.0
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 8.6e-48 193.7 128 69.5
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 1.1e-47 193.4 128 68.8
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.1e-47 193.4 128 70.3
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 4.3e-47 191.4 128 68.0
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 4.3e-47 191.4 128 68.0
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 7.3e-47 190.7 128 68.8
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 7.3e-47 190.7 128 68.0
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 1.2e-46 189.9 128 68.0
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 1.2e-46 189.9 128 68.0
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 1.6e-46 189.5 128 67.2
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 2.1e-46 189.1 128 68.8
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 2.8e-46 188.7 128 68.8
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 3.6e-46 188.3 128 67.2
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 8.1e-46 187.2 128 64.8
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 8.1e-46 187.2 128 67.2
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.1e-45 186.8 128 67.2
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.1e-45 186.8 126 68.3
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 1.4e-45 186.4 128 67.2
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.8e-45 186.0 128 66.4
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 2.4e-45 185.7 128 65.6
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 2.4e-45 185.7 128 66.4
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 3.1e-45 185.3 128 66.4
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 4.0e-45 184.9 128 64.8
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 4.0e-45 184.9 128 64.8
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 4.0e-45 184.9 128 66.4
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 5.2e-45 184.5 128 68.0
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 5.2e-45 184.5 128 64.8
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 5.2e-45 184.5 129 65.1
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 6.8e-45 184.1 128 64.1
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 1.5e-44 183.0 125 67.2
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.5e-44 183.0 128 64.1
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 1.5e-44 183.0 129 64.3
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.0e-44 182.6 128 66.4
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 2.0e-44 182.6 128 64.1
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 3.4e-44 181.8 129 64.3
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 3.4e-44 181.8 128 63.3
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 3.4e-44 181.8 128 64.1
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 4.4e-44 181.4 128 64.8
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 4.4e-44 181.4 128 65.6
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 7.6e-44 180.6 128 64.8
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 9.9e-44 180.3 128 64.8
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 9.9e-44 180.3 126 65.1
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 9.9e-44 180.3 128 62.5
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 9.9e-44 180.3 126 65.1
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.3e-43 179.9 128 63.3
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.7e-43 179.5 128 62.5
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 1.7e-43 179.5 126 63.5
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 2.2e-43 179.1 128 66.4
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 2.2e-43 179.1 125 65.6
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 2.9e-43 178.7 128 64.1
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.9e-43 178.7 128 64.1
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 3.8e-43 178.3 125 64.8
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 3.8e-43 178.3 125 65.6
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 4.9e-43 177.9 126 62.7
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 6.4e-43 177.6 128 63.3
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 6.4e-43 177.6 126 64.3
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 6.4e-43 177.6 128 63.3
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.1e-42 176.8 128 64.1
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.4e-42 176.4 128 63.3
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 1.9e-42 176.0 128 60.2
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.9e-42 176.0 129 65.9
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 2.4e-42 175.6 128 64.8
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 3.2e-42 175.3 128 61.7
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 4.2e-42 174.9 128 61.7
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 4.2e-42 174.9 128 63.3
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 5.4e-42 174.5 128 63.3
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 7.1e-42 174.1 126 64.3
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 7.1e-42 174.1 128 61.7
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 9.3e-42 173.7 124 61.3
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 9.3e-42 173.7 128 60.9
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 9.3e-42 173.7 128 60.2
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.2e-41 173.3 128 61.7
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 1.2e-41 173.3 126 61.1
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 1.2e-41 173.3 128 61.7
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 1.2e-41 173.3 128 63.3
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 2.7e-41 172.2 128 59.4
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 6.0e-41 171.0 128 63.3
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 7.8e-41 170.6 128 63.3
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 7.8e-41 170.6 118 66.9
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.0e-40 170.2 129 62.0
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 1.0e-40 170.2 129 62.0
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.3e-40 169.9 128 62.5
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 1.3e-40 169.9 128 62.5
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 3.9e-40 168.3 128 61.7
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.9e-40 168.3 128 59.4
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 3.9e-40 168.3 128 59.4
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 6.6e-40 167.5 120 65.0
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.9e-39 166.0 128 58.6
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 1.9e-39 166.0 147 55.8
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 4.3e-39 164.9 128 58.6
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 4.3e-39 164.9 128 58.6
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 2.1e-38 162.5 126 58.7
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 4.8e-38 161.4 125 58.4
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 4.8e-38 161.4 128 61.7
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 4.8e-38 161.4 123 60.2
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 1.1e-37 160.2 128 59.4
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 1.8e-37 159.5 106 69.8
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 5.3e-37 157.9 128 61.7
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 3.4e-36 155.2 120 57.5
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 3.4e-36 155.2 126 58.7
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 3.4e-36 155.2 118 58.5
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 4.4e-36 154.8 128 57.8
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 2.9e-35 152.1 160 47.5
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 3.8e-35 151.8 120 56.7
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 8.4e-35 150.6 134 55.2
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 3.2e-34 148.7 125 55.2
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 6.0e-33 144.4 107 58.9
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 7.9e-33 144.1 107 59.8
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 2.3e-32 142.5 101 64.4
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 1.1e-31 140.2 128 52.3
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 1.1e-31 140.2 100 66.0
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 1.5e-31 139.8 92 68.5
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 4.3e-31 138.3 104 63.5
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 8.1e-30 134.0 128 53.1
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 2.2e-27 125.9 110 57.3
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 6.4e-27 124.4 125 48.0
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 2.1e-25 119.4 128 44.5
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 2.5e-23 112.5 120 46.7
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 3.7e-22 108.6 126 44.4
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 4.8e-22 108.2 138 46.4
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 6.0e-17 91.3 131 42.7
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 1.6e-14 83.2 113 39.8
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.1e-14 82.8 62 59.7
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.1e-14 82.8 62 59.7
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 2.1e-14 82.8 126 35.7
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 2.8e-14 82.4 50 66.0
MCO15G566 Micromonas commoda HOM05D005446 ORTHO05D006597 4.1e-13 78.6 117 36.8
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.5e-12 76.6 104 36.5
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.0e-11 73.9 56 57.1


User provided reference genes

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