Gene: AT1G04635

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G04635
  • Transcript Identifier AT1G04635.1
  • Gene Type Coding gene
  • Location Chr1 : 1291350-1291805 : positive

Gene Family Information

  • ID HOM05D005446
  • #Genes/#Species 140/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G04635.1
  • symbol EMB1687
  • Alias AtPOP5,POP5,A. thaliana homolog of yeast POP5
  • full_name EMBRYO DEFECTIVE 1687
  • uniprot Q6AWV1

Descriptions

  • Description ribonuclease P family protein / Rpp14 family protein
  • Computational description EMBRYO DEFECTIVE 1687 (EMB1687); FUNCTIONS IN: ribonuclease activity, ribonuclease P activity; INVOLVED IN: tRNA processing, embryo development ending in seed dormancy; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Ribonuclease P-related (InterPro:IPR002759); Has 266 Blast hits to 266 proteins in 135 species: Archae - 0; Bacteria - 0; Metazoa - 85; Fungi - 108; Plants - 56; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090501
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis
GO:0001682
IEA
Gene OntologytRNA 5'-leader removal
GO:0001682
IEA
InterProtRNA 5'-leader removal
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0008033
IBA
Gene OntologytRNA processing1
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic
GO:0006364
IBA
Gene OntologyrRNA processing1
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0033204
IEA
Gene Ontologyribonuclease P RNA binding
GO:0033204
IEA
InterProribonuclease P RNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0004526
IEA
Gene Ontologyribonuclease P activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030677
IEA
GOA Databaseribonuclease P complex
GO:0030677
IEA
InterProribonuclease P complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005773
IDA
GOA Databasevacuole
GO:0005730
IEA
GOA Databasenucleolus
GO:0005655
IBA
Gene Ontologynucleolar ribonuclease P complex1
GO:0000172
IBA
Gene Ontologyribonuclease MRP complex1
GO:0000325
HDA
Gene Ontologyplant-type vacuole3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016819 Ribonuclease P/MRP protein subunit Pop5
IPR038085 RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily
IPR002759 RNase P subunit Pop5/Rpp14/Rnp2-like
Mapman id Description
16.6.3.5 RNA processing.ribonuclease activities.RNA-dependent RNase P complex.component RPP14/POP5