Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 2.3e-43 178.3 79 100.0
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 4.3e-42 174.1 79 97.5
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 8.1e-41 169.9 79 96.2
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 8.1e-41 169.9 79 96.2
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 8.1e-41 169.9 79 96.2
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 1.8e-40 168.7 79 94.9
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 4.0e-40 167.5 79 94.9
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 8.9e-40 166.4 79 93.7
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 5.8e-39 163.7 79 91.1
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 5.8e-39 163.7 79 91.1
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 1.4e-37 159.1 79 88.6
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 1.4e-37 159.1 79 88.6
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 1.4e-37 159.1 79 88.6
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 1.4e-37 159.1 79 88.6
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 1.4e-37 159.1 79 88.6
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 1.4e-37 159.1 79 88.6
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 1.4e-37 159.1 79 88.6
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 1.4e-37 159.1 79 88.6
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 1.4e-37 159.1 79 88.6
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 1.4e-37 159.1 79 88.6
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 4.1e-37 157.5 79 87.3
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 4.1e-37 157.5 79 87.3
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 5.4e-37 157.1 79 87.3
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 5.4e-37 157.1 79 87.3
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 7.1e-37 156.8 79 86.1
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 7.1e-37 156.8 79 86.1
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 7.1e-37 156.8 79 86.1
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 7.1e-37 156.8 79 86.1
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 7.1e-37 156.8 79 86.1
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 7.1e-37 156.8 79 86.1
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 9.2e-37 156.4 79 86.1
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 1.6e-36 155.6 79 84.8
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 2.7e-36 154.8 79 84.8
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 3.5e-36 154.5 79 84.8
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 3.5e-36 154.5 79 84.8
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 6.0e-36 153.7 79 84.8
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 6.0e-36 153.7 79 84.8
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 7.8e-36 153.3 79 83.5
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 7.8e-36 153.3 75 88.0
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 1.0e-35 152.9 79 83.5
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 1.0e-35 152.9 79 83.5
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 1.0e-35 152.9 79 83.5
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 1.0e-35 152.9 79 83.5
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 1.3e-35 152.5 80 85.0
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 1.3e-35 152.5 79 84.8
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 1.3e-35 152.5 79 84.8
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 1.3e-35 152.5 79 83.5
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 1.7e-35 152.1 79 83.5
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.7e-35 152.1 79 84.8
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 3.0e-35 151.4 79 82.3
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 3.0e-35 151.4 79 83.5
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 3.9e-35 151.0 79 84.8
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 3.9e-35 151.0 79 82.3
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 5.1e-35 150.6 79 82.3
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 6.6e-35 150.2 79 82.3
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 8.6e-35 149.8 79 82.3
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 8.6e-35 149.8 79 83.5
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 8.6e-35 149.8 79 83.5
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 8.6e-35 149.8 79 83.5
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 8.6e-35 149.8 81 84.0
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 8.6e-35 149.8 79 83.5
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 1.1e-34 149.4 79 79.7
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.1e-34 149.4 79 81.0
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 1.1e-34 149.4 78 83.3
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 1.1e-34 149.4 74 87.8
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 1.5e-34 149.1 81 84.0
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 1.5e-34 149.1 79 82.3
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 1.5e-34 149.1 79 82.3
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 1.5e-34 149.1 75 84.0
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 1.9e-34 148.7 78 83.3
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.9e-34 148.7 78 82.1
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 2.5e-34 148.3 79 82.3
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 3.3e-34 147.9 79 81.0
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 5.6e-34 147.1 79 81.0
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 7.3e-34 146.7 76 84.2
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 7.3e-34 146.7 78 82.1
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 7.3e-34 146.7 78 82.1
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 7.3e-34 146.7 78 82.1
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 7.3e-34 146.7 78 82.1
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 9.5e-34 146.4 79 79.7
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 1.2e-33 146.0 77 81.8
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 1.6e-33 145.6 74 85.1
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 1.6e-33 145.6 74 85.1
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 1.6e-33 145.6 77 81.8
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 2.1e-33 145.2 74 83.8
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 2.1e-33 145.2 78 80.8
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 2.1e-33 145.2 75 84.0
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 2.8e-33 144.8 75 84.0
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 4.7e-33 144.1 79 82.3
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 4.7e-33 144.1 79 82.3
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 4.7e-33 144.1 79 82.3
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 4.7e-33 144.1 75 81.3
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 4.7e-33 144.1 75 82.7
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 1.1e-32 142.9 74 82.4
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 1.8e-32 142.1 74 83.8
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 1.8e-32 142.1 78 78.2
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 4.0e-32 141.0 74 81.1
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 6.8e-32 140.2 74 81.1
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 6.8e-32 140.2 74 81.1
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 8.9e-32 139.8 78 75.6
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 8.9e-32 139.8 74 81.1
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.2e-31 139.4 74 78.4
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.2e-31 139.4 74 82.4
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 1.5e-31 139.0 79 81.0
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 2.6e-31 138.3 74 81.1
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 4.4e-31 137.5 74 79.7
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 7.6e-31 136.7 74 78.4
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 1.7e-30 135.6 74 77.0
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 1.7e-30 135.6 80 76.2
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 1.7e-30 135.6 75 76.0
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 2.2e-30 135.2 115 57.4
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 2.9e-30 134.8 75 76.0
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.9e-30 134.8 75 76.0
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.9e-30 134.8 75 76.0
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.9e-30 134.8 75 76.0
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.9e-30 134.8 75 76.0
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 6.4e-30 133.7 74 77.0
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 8.4e-30 133.3 79 72.2
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 1.9e-29 132.1 73 76.7
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 1.9e-29 132.1 73 76.7
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 2.4e-29 131.7 78 73.1
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 5.4e-29 130.6 79 70.9
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 9.2e-29 129.8 77 71.4
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 1.2e-28 129.4 73 75.3
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 1.2e-28 129.4 74 75.7
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 1.2e-28 129.4 74 75.7
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 3.5e-28 127.9 74 74.3
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 4.6e-28 127.5 74 73.0
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.3e-27 125.2 75 73.3
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 5.1e-27 124.0 110 54.5
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 5.1e-27 124.0 77 68.8
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 2.5e-26 121.7 74 66.2
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 2.5e-26 121.7 79 69.6
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 2.5e-26 121.7 74 68.9
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.5e-26 121.7 73 69.9
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 2.5e-26 121.7 73 69.9
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.6e-25 119.0 74 64.9
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 1.8e-24 115.5 74 66.2
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 1.2e-23 112.8 58 82.8
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 3.8e-22 107.8 62 79.0
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 5.4e-21 104.0 59 79.7
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 6.0e-20 100.5 74 66.2
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 3.9e-19 97.8 77 46.8
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 6.6e-19 97.1 63 68.3
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 6.6e-19 97.1 63 68.3
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 6.6e-19 97.1 63 68.3
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.9e-18 95.5 74 62.2
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 3.3e-18 94.7 74 48.6
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 1.5e-15 85.9 79 57.0
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 2.6e-15 85.1 56 60.7
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 4.5e-15 84.3 79 59.5
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 8.7e-11 70.1 67 43.3
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 4.3e-10 67.8 64 46.9
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 1.2e-07 59.7 74 45.9
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 3.8e-06 54.7 36 61.1


User provided reference genes

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