Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 2.4e-75 285.4 143 100.0
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 3.9e-70 268.1 140 93.6
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 3.9e-70 268.1 140 93.6
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 3.9e-70 268.1 140 93.6
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 3.9e-70 268.1 140 92.9
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 3.9e-70 268.1 140 93.6
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 5.1e-70 267.7 140 92.1
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 6.7e-70 267.3 140 92.9
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 8.8e-70 266.9 140 92.9
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 8.8e-70 266.9 140 92.9
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 1.1e-69 266.5 140 92.1
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.5e-69 266.2 140 91.4
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 2.0e-69 265.8 140 92.9
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 2.0e-69 265.8 140 92.9
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 2.0e-69 265.8 140 91.4
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 2.6e-69 265.4 140 91.4
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.3e-68 263.1 140 90.7
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.7e-68 262.7 140 90.0
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 3.7e-68 261.5 140 89.3
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 6.9e-67 257.3 140 90.0
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.9e-65 251.9 136 88.2
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 1.4e-64 249.6 136 87.5
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.9e-64 249.2 136 86.8
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.9e-64 249.2 136 86.8
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 3.2e-64 248.4 138 84.8
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 3.2e-64 248.4 136 86.8
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 4.2e-64 248.1 138 84.8
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 4.2e-64 248.1 138 84.8
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 4.2e-64 248.1 136 87.5
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 1.2e-63 246.5 136 86.0
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 2.7e-63 245.4 138 84.8
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.7e-63 245.4 136 85.3
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 8.0e-63 243.8 136 84.6
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 8.0e-63 243.8 138 82.6
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 1.0e-62 243.4 136 84.6
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 1.4e-62 243.0 136 83.1
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 1.4e-62 243.0 136 85.3
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 1.8e-62 242.7 140 82.1
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 3.0e-62 241.9 136 84.6
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 3.0e-62 241.9 136 85.3
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.0e-62 241.9 136 83.8
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.0e-62 241.9 136 83.8
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.0e-62 241.9 136 83.1
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 3.9e-62 241.5 136 84.6
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 5.2e-62 241.1 138 84.8
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 6.7e-62 240.7 138 81.2
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 8.8e-62 240.4 136 83.8
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 8.8e-62 240.4 136 83.1
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.5e-61 239.6 138 81.2
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 2.0e-61 239.2 136 83.8
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.0e-61 239.2 138 83.3
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 2.0e-61 239.2 136 83.8
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 2.6e-61 238.8 136 82.4
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 3.3e-61 238.4 136 84.6
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 3.3e-61 238.4 136 83.8
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.3e-61 238.4 136 83.1
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 3.3e-61 238.4 136 81.6
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 3.3e-61 238.4 136 82.4
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 3.3e-61 238.4 136 82.4
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 4.4e-61 238.0 136 83.1
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 4.4e-61 238.0 136 83.1
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 4.4e-61 238.0 136 83.1
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 4.4e-61 238.0 136 83.1
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 5.7e-61 237.7 136 83.1
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 9.7e-61 236.9 136 83.1
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 9.7e-61 236.9 136 81.6
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 9.7e-61 236.9 136 81.6
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 9.7e-61 236.9 138 79.7
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.3e-60 236.5 136 81.6
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 1.3e-60 236.5 136 83.1
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 1.7e-60 236.1 143 79.0
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 2.2e-60 235.7 138 80.4
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 2.2e-60 235.7 138 80.4
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 2.2e-60 235.7 138 79.7
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 2.2e-60 235.7 138 79.7
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 2.8e-60 235.3 138 80.4
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 3.7e-60 235.0 138 79.7
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 3.7e-60 235.0 138 79.7
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 3.7e-60 235.0 136 82.4
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 4.8e-60 234.6 138 77.5
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 4.8e-60 234.6 138 77.5
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 6.3e-60 234.2 138 81.9
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 6.3e-60 234.2 138 81.9
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.1e-59 233.4 138 79.0
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.1e-59 233.4 138 77.5
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.4e-59 233.0 138 79.7
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 1.4e-59 233.0 136 78.7
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 2.4e-59 232.3 138 80.4
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 2.4e-59 232.3 136 78.7
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 3.1e-59 231.9 138 78.3
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 3.1e-59 231.9 138 79.7
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 4.1e-59 231.5 136 80.1
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 5.3e-59 231.1 136 79.4
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 5.3e-59 231.1 138 79.7
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 7.0e-59 230.7 138 79.0
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 9.1e-59 230.3 138 78.3
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 1.2e-58 229.9 138 79.7
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 1.2e-58 229.9 138 79.0
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.2e-58 229.9 138 79.0
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.2e-58 229.9 138 79.0
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 3.5e-58 228.4 136 79.4
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.5e-58 228.4 138 78.3
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.5e-58 228.0 138 78.3
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 7.7e-58 227.3 136 77.2
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 7.7e-58 227.3 136 80.9
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.0e-57 226.9 143 76.2
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.1e-56 223.4 138 76.8
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 2.5e-56 222.2 138 75.4
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 3.2e-56 221.9 136 76.5
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 5.5e-56 221.1 136 75.0
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 7.2e-56 220.7 139 77.0
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.6e-55 219.5 127 83.5
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 2.1e-55 219.2 139 74.8
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 2.7e-55 218.8 125 83.2
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 6.1e-55 217.6 140 70.7
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 1.0e-54 216.9 139 74.8
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.8e-54 216.1 137 70.1
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 5.2e-54 214.5 139 74.8
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 5.2e-54 214.5 136 77.2
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 3.3e-53 211.8 144 71.5
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 2.2e-52 209.1 183 61.2
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 3.7e-52 208.4 138 69.6
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 2.4e-51 205.7 138 67.4
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 6.5e-49 197.6 138 65.2
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 1.9e-48 196.1 139 64.7
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 4.7e-47 191.4 136 71.3
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 1.4e-46 189.9 98 93.9
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 1.4e-46 189.9 172 57.0
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 6.8e-46 187.6 140 67.9
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 7.5e-45 184.1 138 68.8
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 9.8e-45 183.7 127 68.5
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 2.8e-44 182.2 136 65.4
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 4.8e-44 181.4 100 86.0
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 8.3e-44 180.6 136 66.2
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 8.3e-44 180.6 112 75.9
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.1e-43 180.3 137 62.0
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.4e-43 179.9 98 87.8
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.3e-41 173.3 96 86.5
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 1.7e-41 172.9 136 62.5
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.3e-41 172.6 95 85.3
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 4.2e-40 168.3 96 81.2
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 4.9e-36 154.8 112 67.9
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-35 153.7 115 67.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 5.4e-35 151.4 115 67.0
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 7.8e-34 147.5 142 48.6
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 8.6e-33 144.1 137 59.9
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.0e-30 135.6 136 54.4
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 9.8e-29 130.6 76 81.6
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 4.1e-27 125.2 99 59.6
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 3.0e-25 119.0 63 90.5
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 7.3e-24 114.4 88 61.4
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.3e-20 103.6 90 57.8
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 2.9e-20 102.4 68 63.2
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 8.6e-17 90.9 56 76.8
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.5e-16 90.1 52 86.5
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 5.2e-14 81.6 129 45.0
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 1.7e-09 66.6 58 58.6
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 8.6e-09 64.3 38 76.3
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 1.2e-07 60.5 37 67.6


User provided reference genes

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