Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.0e-158 562.4 287 100.0
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 1.0e-146 523.5 288 94.1
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 3.0e-146 521.9 290 92.4
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 1.1e-140 503.4 289 91.0
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 1.1e-140 503.4 289 91.0
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 1.6e-139 499.6 290 88.6
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 1.6e-139 499.6 290 88.6
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 4.0e-138 495.0 292 88.7
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 5.2e-138 494.6 292 86.6
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 3.5e-134 481.9 295 85.8
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 5.0e-133 478.0 287 85.7
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 1.2e-131 473.4 289 86.9
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.8e-131 472.2 289 86.5
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 4.9e-128 461.5 292 81.5
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 8.3e-128 460.7 292 81.5
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 1.4e-127 459.9 292 80.8
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 3.2e-127 458.8 292 80.8
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 9.2e-127 457.2 291 81.1
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 9.2e-127 457.2 294 79.3
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 9.2e-127 457.2 293 80.5
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 2.7e-126 455.7 292 80.1
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 6.0e-126 454.5 293 81.2
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 6.0e-126 454.5 292 78.8
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.0e-125 453.8 292 79.8
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.3e-125 453.4 292 78.8
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 3.9e-125 451.8 291 79.4
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 3.9e-125 451.8 293 79.5
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 5.0e-125 451.4 292 79.5
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 6.6e-125 451.1 291 79.4
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.1e-124 450.3 291 79.0
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.1e-124 450.3 293 78.5
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.9e-124 449.5 291 80.4
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.9e-124 449.5 291 80.4
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 1.9e-124 449.5 292 78.1
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.9e-124 449.5 290 78.3
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.9e-124 449.5 290 78.3
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.6e-124 448.0 294 80.3
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 9.5e-124 447.2 294 79.3
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.2e-123 446.8 306 75.8
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.6e-123 446.4 290 78.3
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.6e-123 445.3 287 79.1
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 3.6e-123 445.3 291 79.0
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 2.3e-122 442.6 293 78.2
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 2.3e-122 442.6 291 78.7
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 4.0e-122 441.8 292 77.1
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 5.2e-122 441.4 292 78.1
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 6.8e-122 441.0 293 78.2
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.5e-121 439.9 291 78.7
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 2.0e-121 439.5 292 78.1
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.0e-121 439.5 291 78.0
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 2.0e-121 439.5 292 76.0
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 4.4e-121 438.3 292 78.1
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 9.8e-121 437.2 294 77.6
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.3e-120 436.8 293 77.1
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 1.3e-120 436.8 322 71.4
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 6.4e-120 434.5 294 76.5
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.9e-119 433.0 293 76.8
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 2.4e-119 432.6 282 79.1
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 2.4e-119 432.6 292 75.3
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 9.2e-119 430.6 290 76.2
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 9.2e-119 430.6 326 69.3
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 1.2e-118 430.3 294 75.9
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 2.1e-118 429.5 294 75.2
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 2.7e-118 429.1 294 77.6
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 3.5e-118 428.7 289 76.8
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 3.5e-118 428.7 293 75.4
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.0e-117 427.2 292 75.0
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.7e-117 426.4 290 75.2
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 5.1e-117 424.9 291 75.9
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 5.1e-117 424.9 295 74.2
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.1e-116 423.7 293 76.1
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 1.9e-116 422.9 323 70.9
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 7.3e-116 421.0 288 75.7
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.6e-115 419.9 292 73.3
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 3.6e-115 418.7 273 79.1
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 1.1e-114 417.2 292 73.6
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.8e-114 416.4 285 75.1
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 2.3e-114 416.0 295 73.6
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 2.3e-114 416.0 290 74.1
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 3.1e-114 415.6 299 73.2
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 3.1e-114 415.6 325 69.5
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 6.8e-114 414.5 257 85.6
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 1.5e-113 413.3 291 72.5
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.4e-113 411.8 292 72.3
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.9e-112 409.1 292 72.3
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.1e-111 407.1 292 71.6
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 1.4e-111 406.8 292 69.9
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 4.1e-111 405.2 269 76.6
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 1.2e-110 403.7 293 70.6
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.6e-110 403.3 310 68.7
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 2.1e-110 402.9 312 68.6
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 3.5e-110 402.1 287 72.5
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 4.6e-110 401.7 293 71.7
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 6.0e-110 401.4 288 71.9
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 6.0e-110 401.4 288 71.9
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 7.8e-110 401.0 292 71.6
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 1.7e-109 399.8 293 71.7
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 3.9e-109 398.7 293 70.6
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 6.6e-109 397.9 294 69.0
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 8.6e-109 397.5 292 71.6
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.5e-108 396.7 293 72.7
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 1.2e-107 393.7 292 69.9
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 4.7e-107 391.7 291 71.1
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 2.0e-105 386.3 290 70.7
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 4.4e-105 385.2 289 69.9
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 1.7e-104 383.3 236 82.6
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 4.2e-103 378.6 385 57.9
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 1.6e-102 376.7 291 69.8
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 1.6e-102 376.7 288 66.7
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 2.7e-102 375.9 292 69.9
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 4.6e-102 375.2 297 67.0
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 2.8e-99 365.9 294 64.3
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 3.4e-97 359.0 231 77.1
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 7.6e-97 357.8 295 64.7
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 5.4e-95 351.7 299 63.2
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 7.1e-95 351.3 289 63.7
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-91 340.5 234 72.6
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 6.2e-91 338.2 238 73.5
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.8e-90 336.7 229 73.4
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 3.1e-90 335.9 191 84.3
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.3e-90 335.1 291 63.6
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 4.2e-87 325.5 298 61.4
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.0e-85 320.9 294 62.6
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 2.1e-83 313.2 293 60.8
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.4e-82 310.5 284 59.5
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 1.5e-81 307.0 208 77.9
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 2.9e-80 302.8 288 56.9
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.8e-75 286.2 191 72.8
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 8.2e-75 284.6 300 51.3
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 6.9e-74 281.6 295 51.9
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 3.2e-71 272.7 188 71.8
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 3.2e-71 272.7 202 68.3
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 1.9e-68 263.5 293 51.5
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 5.9e-65 251.9 290 55.5
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 5.9e-65 251.9 290 55.5
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 5.9e-65 251.9 290 55.5
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.6e-62 243.8 285 51.6
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 7.4e-52 208.4 259 51.4
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.2e-47 192.6 105 89.5
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 1.5e-44 184.1 108 83.3
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 2.2e-40 170.2 223 46.2
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 8.5e-40 168.3 154 59.7
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.5e-39 166.8 154 59.1
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 2.5e-39 166.8 154 59.1
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 9.4e-39 164.9 147 61.9
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 1.4e-34 151.0 85 88.2
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 1.0e-32 144.8 188 42.0
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 5.5e-31 139.0 73 93.2
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 5.5e-31 139.0 73 93.2
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 2.1e-30 137.1 72 93.1
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 4.4e-28 129.4 183 48.6
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 1.5e-23 114.4 68 82.4
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 9.5e-23 111.7 118 54.2
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 6.1e-22 109.0 109 57.8
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 5.2e-21 105.9 128 46.1
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 2.0e-20 104.0 107 56.1
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 2.8e-19 100.1 85 60.0
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 7.3e-15 85.5 59 66.1
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.1e-14 84.0 231 31.2
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.3e-11 74.7 58 65.5
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 1.7e-11 74.3 86 51.2


User provided reference genes

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