Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 8.8e-235 817.4 725 100.0
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 4.4e-186 655.6 736 87.4
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 1.4e-184 650.6 722 88.9
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 2.4e-184 649.8 726 87.2
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 4.5e-178 629.0 726 85.0
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 2.2e-177 626.7 726 84.4
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 1.7e-169 600.5 722 81.7
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 8.4e-169 598.2 719 81.9
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 1.6e-167 594.0 722 81.6
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.1e-165 587.8 723 80.4
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 1.5e-165 587.4 719 81.5
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 3.3e-165 586.3 723 80.2
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 7.6e-162 575.1 741 81.1
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 1.3e-140 504.6 714 75.9
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 8.6e-105 385.6 624 76.8
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 8.6e-105 385.6 621 76.5
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.1e-104 385.2 628 76.3
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 1.6e-103 381.3 621 75.8
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 1.0e-102 378.6 623 75.9
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.0e-102 378.6 622 76.0
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 1.8e-102 377.9 617 75.7
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 5.2e-102 376.3 622 76.2
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 5.8e-101 372.9 617 76.5
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 7.5e-101 372.5 626 75.4
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 7.5e-101 372.5 620 75.8
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 7.5e-101 372.5 626 75.1
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 9.8e-101 372.1 623 71.3
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 2.2e-100 370.9 617 75.9
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 3.7e-100 370.2 636 73.4
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 6.4e-100 369.4 622 64.8
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 2.4e-99 367.5 711 63.4
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 4.1e-99 366.7 636 73.4
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 7.0e-99 365.9 629 74.7
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 9.2e-99 365.5 636 73.3
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 2.7e-98 364.0 625 73.6
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 2.7e-98 364.0 621 74.9
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 3.5e-98 363.6 626 73.5
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 4.6e-98 363.2 615 75.1
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 3.0e-97 360.5 728 66.6
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 6.6e-97 359.4 631 73.2
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 2.5e-96 357.5 708 67.4
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 7.3e-96 355.9 623 72.6
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 4.9e-92 343.2 623 73.7
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 8.3e-92 342.4 625 72.2
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 4.1e-91 340.1 612 74.0
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 9.2e-91 339.0 624 72.9
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 1.6e-90 338.2 620 71.9
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 3.5e-90 337.0 638 71.2
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 7.8e-90 335.9 566 78.6
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 1.7e-89 334.7 621 71.7
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 5.1e-89 333.2 697 64.0
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 8.6e-89 332.4 619 72.7
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 1.9e-88 331.3 625 72.5
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 4.3e-88 330.1 615 73.7
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 3.6e-87 327.0 627 72.1
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 8.1e-87 325.9 629 71.5
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 1.4e-86 325.1 627 71.1
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 6.8e-86 322.8 627 70.7
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 1.2e-85 322.0 616 72.2
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 1.4e-83 315.1 702 66.1
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 1.6e-82 311.6 702 65.8
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 2.7e-82 310.8 624 72.3
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 3.5e-82 310.5 715 63.9
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 7.8e-82 309.3 630 70.2
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 1.7e-81 308.1 625 70.1
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 3.9e-81 307.0 626 70.3
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 5.1e-81 306.6 620 70.0
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 1.1e-80 305.4 617 72.3
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 1.1e-80 305.4 584 72.1
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 3.3e-80 303.9 622 70.6
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 7.3e-80 302.8 620 71.8
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 9.5e-80 302.4 621 65.2
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 1.2e-79 302.0 598 71.7
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.8e-79 300.8 415 69.4
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 1.1e-78 298.9 623 67.4
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 9.9e-77 292.4 621 69.2
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 1.7e-76 291.6 627 68.3
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 6.4e-76 289.7 621 69.4
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 1.1e-75 288.9 412 65.5
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.4e-75 288.5 623 69.7
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 4.2e-75 287.0 732 57.1
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.6e-74 285.0 621 69.4
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 7.8e-74 282.7 641 67.4
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 1.5e-72 278.5 272 49.6
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 1.5e-72 278.5 504 81.9
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 1.9e-72 278.1 582 66.8
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 7.3e-72 276.2 631 67.8
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 2.1e-71 274.6 272 52.2
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 1.4e-70 271.9 672 64.7
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 5.3e-70 270.0 636 62.3
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.4e-67 261.2 352 43.5
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 3.5e-66 257.3 274 48.9
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 3.9e-65 253.8 604 68.9
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 5.6e-64 250.0 279 47.3
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 1.4e-62 245.4 262 48.5
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.6e-61 241.1 398 63.8
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 3.9e-49 200.7 334 60.5
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 8.2e-47 193.0 485 76.3
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 5.3e-46 190.3 514 70.8
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 5.0e-44 183.7 545 65.9
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 5.5e-43 180.3 502 74.1
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 6.9e-30 136.7 239 79.5
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.3e-28 132.5 120 55.8
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 3.6e-26 124.4 196 34.2
Pp3c3_19290 Physcomitrium patens HOM05D007098 ORTHO05D008793 3.3e-24 117.9 188 31.4
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 2.2e-23 115.2 174 42.5
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 2.4e-22 111.7 80 71.2
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 1.2e-21 109.4 80 68.8
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 2.6e-21 108.2 76 71.1
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 8.5e-20 103.2 191 30.4
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.5e-19 102.4 77 67.5
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 6.3e-15 87.0 62 71.0
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 7.0e-14 83.6 78 57.7
AL3G52990 Arabidopsis lyrata HOM05D003056 ORTHO05D003422 1.9e-11 75.5 222 25.7
AT2G18940 Arabidopsis thaliana HOM05D003056 ORTHO05D003422 1.9e-11 75.5 232 24.6
SpUn0483_0010 Schrenkiella parvula HOM05D003056 ORTHO05D003422 1.0e-09 69.7 188 26.6
CARHR109480 Cardamine hirsuta HOM05D003056 ORTHO05D003422 2.3e-09 68.6 223 24.2
Carub.0003s3317 Capsella rubella HOM05D003056 ORTHO05D003422 3.0e-09 68.2 246 24.0
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 1.5e-08 65.9 219 25.1
PSO017G1313 Papaver somniferum HOM05D003056 ORTHO05D003422 2.0e-08 65.5 225 27.1
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 5.7e-08 63.9 65 52.3
RcHm_v2.0_Chr4g0401161 Rosa chinensis HOM05D003056 ORTHO05D003422 7.5e-08 63.5 178 25.3
AagrBONN_evm.TU.Sc2ySwM_362.433 Anthoceros agrestis HOM05D003056 ORTHO05D038402 1.3e-07 62.8 130 28.5
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.3e-07 62.8 128 28.1
PSO063G7185 Papaver somniferum HOM05D003056 ORTHO05D003422 1.3e-07 62.8 225 26.2
BcaNung06913 Brassica carinata HOM05D003056 ORTHO05D003422 2.8e-07 61.6 205 23.9
BolC3t18203H Brassica oleracea HOM05D003056 ORTHO05D003422 2.8e-07 61.6 205 23.9
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 3.7e-07 61.2 58 60.3
FvH4_4g07880 Fragaria vesca HOM05D003056 ORTHO05D003422 3.7e-07 61.2 178 24.2
Glyma.09G056200 Glycine max HOM05D003056 ORTHO05D003422 4.8e-07 60.8 179 24.6
C03p59390 Brassica napus HOM05D003056 ORTHO05D003422 6.3e-07 60.5 205 23.9
MD16G1255600 Malus domestica HOM05D003056 ORTHO05D003422 6.3e-07 60.5 166 25.9
FAN17G0903 Fragaria x ananassa HOM05D003056 ORTHO05D003422 8.3e-07 60.1 178 23.6
Nn8g40410 Nelumbo nucifera HOM05D003056 ORTHO05D003422 8.3e-07 60.1 179 25.1
BraA06t26237Z Brassica rapa HOM05D003056 ORTHO05D003422 1.1e-06 59.7 257 24.1
Prupe.3G037500 Prunus persica HOM05D003056 ORTHO05D003422 1.1e-06 59.7 244 23.0
A06p33070 Brassica napus HOM05D003056 ORTHO05D003422 1.8e-06 58.9 257 24.1
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 1.8e-06 58.9 178 23.6
FAN12G3026 Fragaria x ananassa HOM05D003056 ORTHO05D003422 2.4e-06 58.5 178 23.6
THA.LOC104819538 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 3.1e-06 58.2 161 28.0
PGR044G1733 Punica granatum HOM05D003056 ORTHO05D003422 9.1e-06 56.6 188 25.0


User provided reference genes

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