Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 0.0e+00 1823.9 915 100.0
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 0.0e+00 1508.4 927 83.9
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 0.0e+00 1461.4 952 80.5
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 0.0e+00 1454.1 916 82.8
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 0.0e+00 1452.2 913 82.9
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 0.0e+00 1444.1 928 80.8
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 0.0e+00 1442.9 912 82.2
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 0.0e+00 1441.4 912 82.5
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 0.0e+00 1428.3 912 82.0
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 0.0e+00 1341.6 930 75.4
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 0.0e+00 1219.1 918 73.0
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 0.0e+00 1196.0 777 80.7
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 0.0e+00 1148.3 952 64.5
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 4.9e-283 978.0 1026 52.7
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 7.9e-281 970.7 983 55.1
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 3.7e-278 961.8 983 55.1
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 1.7e-275 953.0 851 58.6
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 3.8e-275 951.8 978 54.2
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.1e-274 950.3 978 54.9
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 7.1e-274 947.6 965 54.6
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 2.1e-273 946.0 938 56.6
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 2.5e-271 939.1 1031 52.5
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 3.7e-270 935.3 977 53.9
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.3e-267 926.8 997 51.4
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 1.1e-266 923.7 997 51.7
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 9.3e-266 920.6 1031 52.3
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.3e-264 916.8 987 53.1
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 2.3e-264 916.0 992 51.9
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.3e-264 916.0 768 59.4
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.5e-263 912.5 953 54.5
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.2e-262 909.4 895 55.5
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.7e-262 908.7 953 54.1
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 6.3e-262 907.9 977 52.6
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 2.0e-260 902.9 976 51.6
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 5.9e-260 901.4 987 52.7
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 5.0e-259 898.3 974 50.9
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 4.2e-258 895.2 953 51.4
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 1.5e-255 886.7 956 51.4
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.5e-255 886.7 982 50.8
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 2.2e-254 882.9 929 53.2
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 2.8e-254 882.5 1014 49.5
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 2.4e-253 879.4 973 49.2
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 3.1e-253 879.0 978 50.2
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 9.1e-253 877.5 974 49.6
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 5.9e-252 874.8 967 51.4
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 7.7e-252 874.4 946 51.7
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 7.2e-250 867.8 996 48.2
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.2e-249 867.1 949 50.5
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 1.6e-249 866.7 863 52.7
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 2.1e-249 866.3 999 48.0
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.6e-249 865.5 981 50.6
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 7.9e-249 864.4 887 53.6
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.0e-248 864.0 775 56.5
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 3.0e-248 862.4 983 49.2
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 7.4e-247 857.8 962 50.2
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.4e-245 853.6 903 51.4
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 7.0e-245 851.3 1005 48.7
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.2e-244 850.5 921 51.2
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 8.5e-243 844.3 568 80.3
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 2.5e-242 842.8 960 50.1
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.7e-241 839.3 949 51.6
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.0e-240 837.4 1004 48.1
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 1.0e-240 837.4 952 50.2
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 1.3e-238 830.5 936 51.4
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 3.7e-238 828.9 1004 47.8
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 5.3e-237 825.1 1008 46.7
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 2.2e-235 819.7 887 51.6
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 8.5e-235 817.8 1019 45.9
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 2.5e-234 816.2 903 50.5
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 7.2e-234 814.7 1004 47.2
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.2e-233 813.9 1019 45.8
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 6.1e-233 811.6 713 57.8
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 1.0e-232 810.8 953 48.7
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 6.8e-232 808.1 902 48.3
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 8.8e-232 807.7 980 49.0
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 5.9e-228 795.0 829 50.8
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.7e-227 793.5 997 47.6
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.8e-224 783.5 1036 44.0
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 2.0e-223 780.0 963 45.8
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 9.8e-223 777.7 992 44.7
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 9.8e-223 777.7 966 45.4
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.3e-222 777.3 1005 45.3
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 5.2e-216 755.4 913 47.3
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.9e-210 736.9 838 51.4
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.9e-210 736.9 971 43.5
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 4.7e-209 732.3 881 47.7
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 3.7e-206 722.6 732 52.9
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.0e-203 714.5 1009 42.8
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 6.6e-195 685.3 596 57.4
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 9.2e-189 664.8 559 60.3
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 1.9e-186 657.1 490 66.5
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 3.8e-182 642.9 582 55.7
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 3.0e-179 633.3 804 42.3
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 7.6e-175 618.6 758 48.5
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 2.1e-172 610.5 985 40.9
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 8.7e-171 605.1 821 42.9
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 3.7e-169 599.7 831 40.3
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 3.1e-168 596.7 512 61.1
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 3.1e-168 596.7 768 47.5
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.4e-160 570.5 941 38.8
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 1.8e-152 544.3 630 47.3
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.9e-150 537.0 740 41.6
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.7e-146 522.7 873 38.6
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-136 491.9 877 37.1
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 2.1e-132 477.6 1027 33.3
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-130 471.1 489 49.9
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.4e-130 469.2 931 35.2
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.2e-125 452.6 736 39.5
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 3.0e-123 447.2 314 67.2
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.3e-118 431.8 473 50.3
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.3e-118 431.8 473 50.3
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 2.7e-116 424.1 279 72.8
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-114 417.9 647 39.9
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 2.2e-105 387.9 370 54.1
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.1e-91 340.9 869 31.2
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.7e-89 335.1 340 52.9
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 9.2e-80 302.8 480 42.1
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-79 301.6 749 33.5
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 2.3e-78 298.1 457 38.3
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.3e-77 293.1 857 31.0
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 6.4e-73 280.0 427 37.7
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.7e-70 271.9 438 40.6
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 1.5e-66 258.8 651 30.9
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 1.1e-64 252.7 354 42.9
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 8.7e-62 243.0 160 70.0
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 5.3e-59 233.8 270 45.6
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 8.7e-54 216.5 384 39.8
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 1.3e-52 212.6 140 73.6
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 5.5e-48 197.2 755 27.5
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 9.3e-48 196.4 191 50.3
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 8.7e-46 189.9 174 59.8
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 7.4e-45 186.8 109 79.8
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.0e-41 176.4 164 57.3
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-40 172.9 160 50.6
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.4e-40 172.6 322 34.2
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 9.7e-37 159.8 271 33.6
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 6.3e-36 157.1 141 58.2
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 6.3e-36 157.1 209 43.1
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.4e-35 155.2 229 41.0
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 9.0e-35 153.3 105 70.5
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 2.5e-32 145.2 140 54.3
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 8.2e-28 130.2 93 64.5
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.2e-26 126.3 86 66.3
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.6e-26 125.2 600 27.0
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 2.2e-25 122.1 84 70.2
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 7.4e-21 107.1 123 48.8
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 2.8e-20 105.1 77 72.7
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.4e-19 102.1 83 65.1
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 4.1e-19 101.3 84 58.3
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 4.5e-18 97.8 110 45.5
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 2.7e-15 88.6 251 37.5
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-06 60.1 71 47.9


User provided reference genes

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