Gene: AT1G48360

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G48360
  • Transcript Identifier AT1G48360.1
  • Gene Type Coding gene
  • Location Chr1 : 17868661-17872436 : positive

Gene Family Information

  • ID HOM05D004739
  • #Genes/#Species 155/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G48360.1
  • uniprot Q5XVJ4

Descriptions

  • Description zinc ion binding/nucleic acid binding/hydrolase
  • Computational description zinc ion binding;nucleic acid binding;hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides; FUNCTIONS IN: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: HIP116, Rad5p N-terminal (InterPro:IPR014905); Has 572 Blast hits to 551 proteins in 242 species: Archae - 0; Bacteria - 261; Metazoa - 71; Fungi - 95; Plants - 95; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0036297
IMP, IGI
IBA
IEA
Gene Ontologyinterstrand cross-link repair1 2 3
GO:0036297
IEA
InterProinterstrand cross-link repair
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0007129
IGI
Gene Ontologyhomologous chromosome pairing at meiosis4
GO:0000724
IMP
Gene Ontologydouble-strand break repair via homologous recombination2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070336
IBA
Gene Ontologyflap-structured DNA binding1
GO:0003677
ISO
PLAZA Homology (enrichment)DNA binding HOM05D004739
GO:0016818
IEA
Gene Ontologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016818
IEA
InterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0008270
IEA
Gene Ontologyzinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004518
IEA
InterPronuclease activity
GO:0016788
IEA
GOA Databasehydrolase activity, acting on ester bonds
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0008409
IBA
Gene Ontology5'-3' exonuclease activity1
GO:0017108
IBA
Gene Ontology5'-flap endonuclease activity1
GO:0004528
IEA
Gene Ontologyphosphodiesterase I activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IBA
Gene Ontologynucleus1
GO:0005739
ISM
Gene Ontologymitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR033315 Fanconi-associated nuclease 1-like
IPR014905 HIRAN domain
Mapman id Description
13.3.5.5.2.2.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.endonuclease (FAN1)