Gene: COL.COLO4_08079

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_08079
  • Transcript Identifier COL.rna6882
  • Gene Type Coding gene
  • Location AWUE01013582.1 : 12283-20379 : positive

Gene Family Information

  • ID HOM05D004739
  • #Genes/#Species 155/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna6882
  • GenBank OMP06529.1
  • id gene8051
  • gene_name COLO4_08079
  • uniprot A0A1R3KHI7

Descriptions

  • Description putative Zinc finger, Rad18-type
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0007129
ISO
PLAZA Integrative Orthologyhomologous chromosome pairing at meiosis AT1G48360
GO:0000724
ISO
PLAZA Integrative Orthologydouble-strand break repair via homologous recombination AT1G48360
GO:0036297
IEA
GOA Databaseinterstrand cross-link repair
GO:0036297
IEA
InterProinterstrand cross-link repair
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016788
IEA
GOA Databasehydrolase activity, acting on ester bonds
GO:0016788
IEA
InterProhydrolase activity, acting on ester bonds
GO:0004518
IEA
GOA Databasenuclease activity
GO:0004518
IEA
InterPronuclease activity
GO:0016818
IEA
GOA Databasehydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016818
IEA
InterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IEA
InterProDNA binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0004528
IEA
GOA Databasephosphodiesterase I activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006642 Rad18, zinc finger UBZ4-type
IPR021099 Plant organelle RNA recognition domain
IPR014883 VRR-NUC domain
IPR014905 HIRAN domain
IPR011856 tRNA endonuclease-like domain superfamily
IPR033315 Fanconi-associated nuclease 1-like
Mapman id Description
13.3.5.5.2.2.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class II interference-insensitive crossover pathway.MUS81-independent pathway.endonuclease (FAN1)