Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 2.2e-207 725.3 354 100.0
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 1.8e-177 625.9 357 86.0
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 3.8e-175 618.2 357 85.7
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 5.0e-175 617.8 358 86.0
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 8.6e-167 590.5 354 84.2
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 1.1e-161 573.5 354 82.8
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 3.9e-159 565.1 351 82.1
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 5.0e-159 564.7 351 82.3
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 2.1e-157 559.3 351 81.5
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 2.1e-157 559.3 351 81.5
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 2.8e-157 558.9 351 81.5
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 2.7e-152 542.3 316 84.5
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 1.7e-138 496.5 361 71.7
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 4.2e-129 465.3 307 74.6
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 1.5e-126 456.8 325 69.5
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 3.3e-126 455.7 326 68.4
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 1.3e-125 453.8 310 71.0
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 1.3e-125 453.8 316 70.6
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 1.6e-125 453.4 306 72.9
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 2.1e-125 453.0 307 72.0
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 2.1e-125 453.0 314 72.0
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 2.1e-125 453.0 307 72.0
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 4.8e-125 451.8 328 68.3
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 6.2e-125 451.4 325 68.9
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 1.1e-124 450.7 309 71.5
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 1.1e-124 450.7 307 71.3
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 1.4e-124 450.3 325 68.9
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 3.1e-124 449.1 320 69.1
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 3.1e-124 449.1 313 70.6
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 4.0e-124 448.7 329 67.2
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 2.0e-123 446.4 317 69.1
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 4.5e-123 445.3 305 71.1
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 7.6e-123 444.5 316 68.0
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 7.6e-123 444.5 283 74.9
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 1.3e-122 443.7 329 66.6
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 1.3e-122 443.7 315 68.3
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 2.2e-122 443.0 331 66.8
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 3.8e-122 442.2 321 68.8
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 8.4e-122 441.0 305 69.5
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 1.1e-121 440.7 339 64.6
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 1.4e-121 440.3 305 69.8
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 2.4e-121 439.5 330 66.4
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 3.2e-121 439.1 306 68.6
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 3.2e-121 439.1 307 70.4
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 5.4e-121 438.3 304 70.7
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 7.1e-121 438.0 338 65.7
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 1.2e-120 437.2 263 77.9
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 1.6e-120 436.8 306 70.3
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 3.5e-120 435.6 305 69.8
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 3.5e-120 435.6 305 69.8
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 4.6e-120 435.3 316 67.1
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 1.0e-119 434.1 307 67.8
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 2.3e-119 433.0 336 64.9
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 2.3e-119 433.0 314 68.5
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 2.3e-119 433.0 310 68.4
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 3.0e-119 432.6 307 70.0
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 3.0e-119 432.6 309 69.6
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 3.9e-119 432.2 283 72.4
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 5.1e-119 431.8 331 65.6
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 1.5e-118 430.3 308 67.5
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 1.5e-118 430.3 304 70.1
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 2.5e-118 429.5 305 68.9
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 3.3e-118 429.1 304 69.7
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 4.3e-118 428.7 305 69.2
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 5.6e-118 428.3 304 69.7
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 7.4e-118 427.9 312 69.9
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 1.3e-117 427.2 337 63.5
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 4.8e-117 425.2 330 64.5
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 1.4e-116 423.7 308 68.8
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 1.4e-116 423.7 284 73.9
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 2.4e-116 422.9 285 71.9
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 6.9e-116 421.4 307 68.4
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 9.0e-116 421.0 328 65.9
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 1.2e-115 420.6 303 68.0
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 1.5e-115 420.2 263 75.7
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 3.4e-115 419.1 307 68.1
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.2e-114 416.4 249 77.9
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 2.9e-114 416.0 307 67.4
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 8.4e-114 414.5 330 63.9
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 1.4e-113 413.7 307 65.8
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 3.2e-113 412.5 314 65.6
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 1.2e-112 410.6 284 70.1
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 2.1e-112 409.8 248 76.2
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 2.7e-112 409.5 308 65.6
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 3.5e-112 409.1 232 81.5
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 1.3e-111 407.1 276 68.8
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 1.3e-111 407.1 283 69.6
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 2.3e-111 406.4 351 57.5
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 6.7e-111 404.8 305 63.0
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 2.5e-110 402.9 320 65.6
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 3.7e-109 399.1 320 65.0
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 6.2e-109 398.3 261 70.9
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 5.8e-107 391.7 306 64.1
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 1.7e-106 390.2 305 63.0
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 2.9e-106 389.4 217 82.5
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 7.1e-105 384.8 234 75.2
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 9.7e-102 374.4 333 61.3
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 3.2e-97 359.4 312 59.6
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 1.0e-95 354.4 300 60.0
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 4.3e-94 349.0 233 69.1
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 1.2e-88 330.9 315 55.6
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 5.9e-83 312.0 179 79.9
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 5.9e-83 312.0 179 79.9
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 1.0e-82 311.2 304 50.7
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 8.8e-79 298.1 219 68.0
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 3.7e-77 292.7 197 71.6
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 3.3e-70 269.6 221 58.8
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 8.2e-69 265.0 189 66.1
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 2.3e-63 246.9 150 78.0
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 9.5e-57 224.9 160 65.0
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 8.3e-45 185.3 167 53.3
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 5.8e-30 136.0 78 75.6
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 5.2e-23 112.8 117 52.1
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 2.7e-19 100.5 59 79.7
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 2.5e-17 94.0 141 43.3
CARHR156600 Cardamine hirsuta HOM05D006818 ORTHO05D008674 4.0e-15 86.7 86 65.1
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 1.1e-12 78.6 52 69.2
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 4.0e-07 60.1 174 28.7
Sopen07g001560 Solanum pennellii HOM05D003204 ORTHO05D003566 9.0e-07 58.9 181 29.8
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 1.2e-06 58.5 171 26.9
C09p49990 Brassica napus HOM05D003204 ORTHO05D003566 2.6e-06 57.4 179 25.7
BolC9t57852H Brassica oleracea HOM05D003204 ORTHO05D003566 2.6e-06 57.4 179 25.7
Os02g0612900 Oryza sativa ssp. japonica HOM05D003204 ORTHO05D003566 2.6e-06 57.4 172 27.9
Solyc07g005210.3 Solanum lycopersicum HOM05D003204 ORTHO05D003566 2.6e-06 57.4 181 29.3
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 4.5e-06 56.6 170 25.3
BcaB01g04554 Brassica carinata HOM05D003204 ORTHO05D003566 5.8e-06 56.2 170 26.5
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 5.8e-06 56.2 170 26.5
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 5.8e-06 56.2 170 26.5
PGSC0003DMG400003187 Solanum tuberosum HOM05D003204 ORTHO05D003566 5.8e-06 56.2 172 29.7
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 7.6e-06 55.8 182 28.6
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 7.6e-06 55.8 182 28.6
FvH4_1g01260 Fragaria vesca HOM05D003204 ORTHO05D003566 9.9e-06 55.5 171 28.1


User provided reference genes

Program Settings