Gene: AT3G47860

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G47860
  • Transcript Identifier AT3G47860.1
  • Gene Type Coding gene
  • Location Chr3 : 17656778-17658269 : negative

Gene Family Information

  • ID HOM05D006818
  • #Genes/#Species 118/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G47860.1
  • symbol CHL
  • uniprot Q9STS7

Descriptions

  • Description chloroplastic lipocalin
  • Computational description chloroplastic lipocalin (CHL); FUNCTIONS IN: binding; INVOLVED IN: response to oxidative stress; LOCATED IN: thylakoid lumen, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipocalin-like (InterPro:IPR013208), Lipocalin conserved site (InterPro:IPR022272), Calycin (InterPro:IPR012674), Calycin-like (InterPro:IPR011038); Has 184 Blast hits to 184 proteins in 68 species: Archae - 0; Bacteria - 14; Metazoa - 66; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009644
IMP, IEP
Gene Ontologyresponse to high light intensity1 2
GO:0006629
IEA
GOA Databaselipid metabolic process
GO:0010117
IDA
Gene Ontologyphotoprotection3
GO:0010431
IMP
Gene Ontologyseed maturation2
GO:0009408
IMP
Gene Ontologyresponse to heat2
GO:1901562
IEP
Gene Ontologyresponse to paraquat1
GO:0046322
IMP
Gene Ontologynegative regulation of fatty acid oxidation1
GO:0009737
IEP
Gene Ontologyresponse to abscisic acid1
GO:0009414
IEP
Gene Ontologyresponse to water deprivation1
GO:0006979
IMP
Gene Ontologyresponse to oxidative stress1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0036094
IEA
Gene Ontologysmall molecule binding
GO:0036094
IEA
InterProsmall molecule binding
GO:0045735
IEA
GOA Databasenutrient reservoir activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009579
IEA
GOA Databasethylakoid
GO:0009507
IDA
IEA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast4
GO:0009536
IEA
GOA Databaseplastid
GO:0009535
IDA
GOA Databasechloroplast thylakoid membrane
GO:0009535
HDA
Gene Ontologychloroplast thylakoid membrane5
GO:0009543
IEA
GOA Databasechloroplast thylakoid lumen
GO:0005829
HDA
Gene Ontologycytosol6
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0031977
IDA
Gene Ontologythylakoid lumen1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000566 Lipocalin/cytosolic fatty-acid binding domain
IPR002345 Lipocalin
IPR012674 Calycin
Mapman id Description
1.1.1.5.3.2.1 Photosynthesis.photophosphorylation.photosystem II.photosynthetic acclimation.non-photochemical quenching (NPQ).qH-type antenna quenching.NPQ-regulatory lipocalin (LCNP)