Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 2.9e-42 174.9 93 100.0
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 4.4e-14 81.3 77 62.3
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 4.4e-14 81.3 77 62.3
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 5.8e-14 80.9 52 86.5
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 5.8e-14 80.9 52 86.5
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 1.7e-13 79.3 52 84.6
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 1.7e-13 79.3 52 84.6
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 1.7e-13 79.3 52 84.6
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 1.7e-13 79.3 52 84.6
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 1.7e-13 79.3 52 84.6
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 1.7e-13 79.3 52 84.6
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.7e-13 79.3 52 84.6
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 2.9e-13 78.6 52 82.7
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 2.9e-13 78.6 67 68.7
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 4.9e-13 77.8 52 80.8
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 2.4e-12 75.5 52 82.7
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 2.4e-12 75.5 52 82.7
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 2.4e-12 75.5 52 78.8
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 4.2e-12 74.7 52 78.8
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.2e-12 74.7 52 78.8
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.2e-12 74.7 52 78.8
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.2e-12 74.7 52 78.8
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 5.4e-12 74.3 56 78.6
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 7.1e-12 73.9 52 76.9
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 1.2e-11 73.2 52 76.9
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 1.6e-11 72.8 52 76.9
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.1e-11 72.4 67 61.2
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 2.1e-11 72.4 52 76.9
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 2.1e-11 72.4 52 76.9
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 2.7e-11 72.0 52 75.0
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 3.5e-11 71.6 52 76.9
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 3.5e-11 71.6 52 76.9
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 4.6e-11 71.2 52 76.9
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 4.6e-11 71.2 52 76.9
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 6.0e-11 70.9 52 76.9
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 7.8e-11 70.5 52 75.0
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 7.8e-11 70.5 52 75.0
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 1.0e-10 70.1 52 73.1
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 1.0e-10 70.1 52 75.0
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 1.0e-10 70.1 52 73.1
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 1.3e-10 69.7 52 75.0
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.3e-10 69.7 52 75.0
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 1.3e-10 69.7 52 75.0
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.3e-10 69.7 52 75.0
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 1.3e-10 69.7 52 73.1
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 1.3e-10 69.7 52 75.0
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 1.7e-10 69.3 52 75.0
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 1.7e-10 69.3 52 75.0
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 1.7e-10 69.3 52 73.1
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.3e-10 68.9 52 73.1
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 2.3e-10 68.9 52 73.1
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 2.3e-10 68.9 52 73.1
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 2.3e-10 68.9 78 55.1
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 3.0e-10 68.6 52 73.1
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 3.0e-10 68.6 69 60.9
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 3.0e-10 68.6 52 73.1
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 3.0e-10 68.6 52 73.1
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 3.0e-10 68.6 52 73.1
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 3.9e-10 68.2 69 60.9
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 3.9e-10 68.2 52 73.1
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 3.9e-10 68.2 54 70.4
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 5.1e-10 67.8 52 73.1
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 5.1e-10 67.8 52 73.1
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 6.6e-10 67.4 52 71.2
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 6.6e-10 67.4 52 71.2
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 6.6e-10 67.4 52 71.2
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 6.6e-10 67.4 52 69.2
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 6.6e-10 67.4 52 73.1
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 6.6e-10 67.4 52 73.1
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 6.6e-10 67.4 52 73.1
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 6.6e-10 67.4 52 71.2
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 6.6e-10 67.4 52 71.2
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 6.6e-10 67.4 52 71.2
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 6.6e-10 67.4 52 69.2
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 6.6e-10 67.4 52 71.2
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 8.7e-10 67.0 52 73.1
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 8.7e-10 67.0 78 53.8
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 8.7e-10 67.0 52 69.2
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 8.7e-10 67.0 52 71.2
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 8.7e-10 67.0 52 71.2
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 8.7e-10 67.0 69 59.4
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.1e-09 66.6 52 71.2
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 1.1e-09 66.6 43 83.7
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.1e-09 66.6 52 71.2
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 1.1e-09 66.6 52 71.2
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 1.1e-09 66.6 52 69.2
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 1.1e-09 66.6 52 71.2
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 1.1e-09 66.6 52 71.2
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 1.5e-09 66.2 73 56.2
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 1.5e-09 66.2 73 56.2
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 1.5e-09 66.2 69 59.4
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.5e-09 66.2 52 69.2
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.5e-09 66.2 52 69.2
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.5e-09 66.2 51 72.5
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 1.9e-09 65.9 52 71.2
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 1.9e-09 65.9 52 69.2
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 1.9e-09 65.9 52 69.2
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 2.5e-09 65.5 52 71.2
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 3.3e-09 65.1 73 54.8
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 3.3e-09 65.1 78 53.8
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 3.3e-09 65.1 52 69.2
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 4.3e-09 64.7 52 69.2
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 5.6e-09 64.3 52 65.4
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 5.6e-09 64.3 52 69.2
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 5.6e-09 64.3 74 58.1
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 5.6e-09 64.3 74 58.1
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 7.3e-09 63.9 52 67.3
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 7.3e-09 63.9 52 67.3
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 9.6e-09 63.5 52 67.3
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.3e-08 63.2 43 79.1
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 1.6e-08 62.8 43 76.7
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 2.1e-08 62.4 64 57.8
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 2.1e-08 62.4 73 54.8
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 2.1e-08 62.4 52 67.3
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 2.8e-08 62.0 78 50.0
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 2.8e-08 62.0 52 67.3
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.6e-08 61.6 79 53.2
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 4.8e-08 61.2 54 63.0
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 8.1e-08 60.5 52 69.2
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 1.5e-06 56.2 69 47.8


User provided reference genes

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