Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 3.7e-188 661.8 433 100.0
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 4.0e-142 508.8 473 72.7
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 1.9e-136 490.0 445 74.4
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 4.3e-136 488.8 445 74.2
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 4.8e-135 485.3 520 63.7
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 5.3e-134 481.9 471 69.4
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 4.4e-133 478.8 483 69.2
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 4.9e-132 475.3 450 69.1
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 4.9e-132 475.3 473 67.9
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 2.4e-131 473.0 461 70.1
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 4.2e-131 472.2 461 70.1
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 7.1e-131 471.5 471 66.9
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 3.5e-130 469.2 480 65.6
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 3.0e-129 466.1 437 70.0
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 2.9e-124 449.5 500 66.0
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 1.2e-122 444.1 525 61.5
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 1.6e-122 443.7 475 67.4
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 1.5e-120 437.2 435 74.7
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 6.7e-105 385.2 458 63.3
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 6.7e-105 385.2 458 63.3
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 1.5e-88 330.9 489 51.7
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 3.5e-85 319.7 449 49.4
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 1.0e-84 318.2 456 48.9
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.9e-84 316.6 440 55.0
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 8.5e-84 315.1 439 53.1
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 8.5e-84 315.1 453 51.0
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 1.6e-82 310.8 438 54.3
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 4.7e-82 309.3 456 51.3
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 6.1e-82 308.9 439 52.6
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.4e-81 307.8 440 51.4
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 8.8e-81 305.1 451 49.9
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 4.4e-80 302.8 456 53.7
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 9.7e-80 301.6 442 51.4
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 2.2e-79 300.4 447 47.7
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 4.8e-79 299.3 449 50.1
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 6.3e-79 298.9 452 51.1
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 8.2e-79 298.5 440 55.7
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.4e-78 297.7 444 51.1
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.8e-78 297.4 434 50.5
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 3.1e-78 296.6 483 47.6
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 4.1e-78 296.2 440 51.8
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 7.0e-78 295.4 446 52.5
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 7.0e-78 295.4 456 47.6
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 5.9e-77 292.4 244 70.1
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 5.9e-77 292.4 494 46.4
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.0e-76 291.6 438 50.7
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 2.9e-76 290.0 449 51.7
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 6.5e-76 288.9 455 56.5
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.1e-75 288.1 444 55.9
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 1.5e-75 287.7 443 52.6
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 1.2e-74 284.6 489 46.8
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 1.6e-74 284.3 505 44.6
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 1.6e-74 284.3 456 45.4
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 2.7e-74 283.5 441 46.9
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 2.7e-74 283.5 435 50.6
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 6.1e-74 282.3 449 54.8
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 2.6e-72 276.9 485 46.8
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 7.5e-72 275.4 433 47.3
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 8.3e-71 271.9 441 50.8
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 8.3e-71 271.9 441 50.8
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 1.1e-70 271.6 434 60.8
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 1.1e-70 271.6 445 47.6
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.4e-70 271.2 444 49.3
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 2.4e-70 270.4 461 46.0
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.0e-69 267.3 446 48.2
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 5.9e-69 265.8 451 51.0
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 1.0e-68 265.0 541 42.5
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.0e-68 265.0 455 46.2
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 5.0e-68 262.7 487 44.8
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 4.7e-66 256.1 473 49.0
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 4.7e-66 256.1 511 51.9
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 8.0e-66 255.4 437 54.7
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 1.0e-65 255.0 521 43.0
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 1.8e-65 254.2 451 48.3
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 2.0e-64 250.8 494 50.4
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 5.7e-64 249.2 557 45.2
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.3e-63 248.1 582 47.8
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 3.7e-63 246.5 535 47.1
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 1.1e-62 245.0 488 52.0
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 1.8e-62 244.2 509 40.3
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 7.0e-62 242.3 516 45.2
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.6e-61 241.1 534 42.7
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 2.3e-60 237.3 571 36.6
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 6.6e-60 235.7 609 44.0
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 5.5e-59 232.6 446 42.4
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 1.6e-58 231.1 522 45.0
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.6e-58 229.9 582 42.8
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 6.8e-57 225.7 550 41.1
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 1.5e-56 224.6 528 49.6
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.0e-56 224.2 623 41.9
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 2.6e-56 223.8 623 41.7
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.6e-56 223.8 622 42.3
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 2.6e-56 223.8 555 44.7
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 5.7e-56 222.6 168 72.6
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 7.5e-56 222.2 455 42.4
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 9.8e-56 221.9 440 48.9
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 1.7e-55 221.1 624 40.9
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 1.4e-54 218.0 451 40.8
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 2.4e-54 217.2 539 43.8
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 2.3e-52 210.7 598 39.5
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 6.8e-49 199.1 174 66.7
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 8.9e-49 198.7 626 39.1
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.5e-48 198.0 193 60.1
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 4.0e-41 173.3 164 62.8
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.7e-39 166.8 406 37.2
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 4.9e-39 166.4 520 42.7
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 3.5e-37 160.2 152 63.2
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 3.5e-37 160.2 434 39.9
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 4.6e-37 159.8 188 51.1
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.9e-35 154.5 178 53.9
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.9e-35 154.5 358 43.0
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 1.3e-31 141.7 169 52.7
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 4.9e-31 139.8 111 71.2
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 2.4e-30 137.5 83 84.3
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 1.2e-29 135.2 92 78.3
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 2.1e-29 134.4 83 90.4
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 3.5e-29 133.7 80 85.0
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 4.7e-26 123.2 331 40.2
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.4e-25 121.7 407 45.5
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 6.8e-25 119.4 158 51.3
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.1e-22 112.1 103 64.1
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 2.4e-22 110.9 127 54.3
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 2.1e-21 107.8 107 57.0
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 2.3e-20 104.4 175 35.4
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 3.9e-20 103.6 125 55.2
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.4e-17 95.1 63 76.2
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.4e-17 94.4 118 46.6
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 3.1e-17 94.0 184 36.4
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 7.6e-16 89.4 100 47.0
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 3.8e-15 87.0 60 71.7
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.9e-14 84.7 91 46.2
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 2.1e-13 81.3 53 77.4
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 2.5e-11 74.3 113 46.9
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 4.0e-09 67.0 111 41.4
BcaB05g23360 Brassica carinata HOM05D000598 ORTHO05D006049 2.0e-08 64.7 50 76.0
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 2.0e-08 64.7 189 29.6
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 4.5e-08 63.5 71 54.9


User provided reference genes

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