Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thhalv10000575m.g Eutrema salsugineum HOM05D005598 ORTHO05D006587 5.7e-158 560.8 276 100.0
BcaC02g08374 Brassica carinata HOM05D005598 ORTHO05D006587 3.0e-143 511.9 295 87.1
C04p55060 Brassica napus HOM05D005598 ORTHO05D006587 3.0e-143 511.9 295 87.1
BolC4t27046H Brassica oleracea HOM05D005598 ORTHO05D006587 3.0e-143 511.9 295 87.1
BraA04t17544Z Brassica rapa HOM05D005598 ORTHO05D006587 8.8e-143 510.4 295 87.1
BcaB06g28035 Brassica carinata HOM05D005598 ORTHO05D006587 2.6e-142 508.8 295 86.8
A04p19500 Brassica napus HOM05D005598 ORTHO05D006587 4.4e-142 508.1 295 86.4
Carub.0004s0468 Capsella rubella HOM05D005598 ORTHO05D006587 5.7e-142 507.7 291 86.6
CARHR116600 Cardamine hirsuta HOM05D005598 ORTHO05D006587 4.8e-141 504.6 291 87.3
Sp4g04110 Schrenkiella parvula HOM05D005598 ORTHO05D006587 1.4e-140 503.1 291 86.9
AT2G25100 Arabidopsis thaliana HOM05D005598 ORTHO05D006587 9.1e-140 500.4 291 85.2
Aa31LG7G12150 Aethionema arabicum HOM05D005598 ORTHO05D006587 3.1e-132 475.3 291 81.1
THA.LOC104824207 Tarenaya hassleriana HOM05D005598 ORTHO05D006587 2.1e-128 462.6 296 78.0
Nn6g34854 Nelumbo nucifera HOM05D005598 ORTHO05D006587 9.8e-118 427.2 291 72.5
QL04p046731 Quercus lobata HOM05D005598 ORTHO05D006587 1.3e-117 426.8 290 71.7
TAR636G1340 Trochodendron aralioides HOM05D005598 ORTHO05D006587 1.7e-117 426.4 291 72.5
CSS0000091 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 8.3e-117 424.1 291 71.1
PSO339G6152 Papaver somniferum HOM05D005598 ORTHO05D006587 8.3e-117 424.1 290 71.7
CiPaw.13G040600 Carya illinoinensis HOM05D005598 ORTHO05D006587 1.4e-116 423.3 291 72.2
MD02G1261600 Malus domestica HOM05D005598 ORTHO05D006587 3.1e-116 422.2 291 71.8
Migut.F01603 Erythranthe guttata HOM05D005598 ORTHO05D006587 7.0e-116 421.0 290 70.3
Atru.chr12.1043 Acer truncatum HOM05D005598 ORTHO05D006587 1.6e-115 419.9 291 70.8
Potri.008G019800 Populus trichocarpa HOM05D005598 ORTHO05D006587 5.9e-115 417.9 291 70.1
SalBow6G5745 Salvia bowleyana HOM05D005598 ORTHO05D006587 7.8e-115 417.5 290 70.3
Lj2C33T4 Lonicera japonica HOM05D005598 ORTHO05D006587 1.0e-114 417.2 294 69.7
Rhsim09G0141700 Rhododendron simsii HOM05D005598 ORTHO05D006587 1.3e-114 416.8 291 70.1
CsaV3_4G003460 Cucumis sativus L. HOM05D005598 ORTHO05D006587 1.7e-114 416.4 291 70.1
Aqoxy4G02744 Aquilegia oxysepala HOM05D005598 ORTHO05D006587 2.9e-114 415.6 290 69.0
Sabra08G0013100 Salix brachista HOM05D005598 ORTHO05D006587 3.8e-114 415.2 292 70.2
TWI38G0756 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 5.0e-114 414.8 291 70.4
MELO3C017716.2 Cucumis melo HOM05D005598 ORTHO05D006587 6.6e-114 414.5 291 69.8
Ciclev10016103m.g Citrus clementina HOM05D005598 ORTHO05D006587 8.6e-114 414.1 291 70.8
MSTRG.23901 Avicennia marina HOM05D005598 ORTHO05D006587 1.1e-113 413.7 293 68.3
Eucgr.G02689 Eucalyptus grandis HOM05D005598 ORTHO05D006587 1.1e-113 413.7 291 70.4
Thecc.10G109100 Theobroma cacao HOM05D005598 ORTHO05D006587 1.5e-113 413.3 290 70.3
TWI63G1098 Tripterygium wilfordii HOM05D005598 ORTHO05D006587 1.5e-113 413.3 273 73.6
Cc02_g09610 Coffea canephora HOM05D005598 ORTHO05D006587 2.5e-113 412.5 291 69.1
Gohir.A05G287700 Gossypium hirsutum HOM05D005598 ORTHO05D006587 3.3e-113 412.1 291 70.8
HanXRQChr11g0342091 Helianthus annuus HOM05D005598 ORTHO05D006587 3.3e-113 412.1 291 69.1
Duzib128G1802 Durio zibethinus HOM05D005598 ORTHO05D006587 5.6e-113 411.4 290 70.0
GSVIVG01010722001 Vitis vinifera HOM05D005598 ORTHO05D006587 5.6e-113 411.4 291 69.8
Lsat_1_v5_gn_2_104400 Lactuca sativa HOM05D005598 ORTHO05D006587 7.3e-113 411.0 286 69.6
Hund06785 Selenicereus undatus HOM05D005598 ORTHO05D006587 1.2e-112 410.2 292 70.5
Sc09g0005330 Simmondsia chinensis HOM05D005598 ORTHO05D006587 1.2e-112 410.2 291 69.8
Gohir.D05G288900 Gossypium hirsutum HOM05D005598 ORTHO05D006587 1.6e-112 409.8 291 70.1
Peaxi162Scf00173g00110 Petunia axillaris HOM05D005598 ORTHO05D006587 2.8e-112 409.1 291 69.1
PGR142G4231 Punica granatum HOM05D005598 ORTHO05D006587 2.8e-112 409.1 294 70.1
arahy.Tifrunner.gnm1.ann1.8DLZ0X Arachis hypogaea HOM05D005598 ORTHO05D006587 3.6e-112 408.7 290 68.6
TPR.G2473 Trifolium pratense HOM05D005598 ORTHO05D006587 3.6e-112 408.7 290 68.3
EL10Ac4g08688 Beta vulgaris HOM05D005598 ORTHO05D006587 4.7e-112 408.3 292 69.5
Nitab4.5_0003590g0030 Nicotiana tabacum HOM05D005598 ORTHO05D006587 4.7e-112 408.3 291 68.7
Ca_25662_v3 Cicer arietinum L. HOM05D005598 ORTHO05D006587 6.1e-112 407.9 292 69.5
ECA238G1649 Erigeron canadensis HOM05D005598 ORTHO05D006587 1.4e-111 406.8 291 68.7
Gorai.009G304000 Gossypium raimondii HOM05D005598 ORTHO05D006587 1.8e-111 406.4 291 69.8
CAN.G645.19 Capsicum annuum HOM05D005598 ORTHO05D006587 4.0e-111 405.2 290 66.9
Haze_03295 Corylus avellana HOM05D005598 ORTHO05D006587 5.2e-111 404.8 302 68.2
Medtr1g111980 Medicago truncatula HOM05D005598 ORTHO05D006587 6.8e-111 404.4 291 67.7
Sopen11g002760 Solanum pennellii HOM05D005598 ORTHO05D006587 6.8e-111 404.4 291 67.7
Lj5g0018811 Lotus japonicus HOM05D005598 ORTHO05D006587 8.9e-111 404.1 291 69.1
CANSAT56G2222 Cannabis sativa HOM05D005598 ORTHO05D006587 1.5e-110 403.3 290 68.3
RcHm_v2.0_Chr5g0049931 Rosa chinensis HOM05D005598 ORTHO05D006587 1.5e-110 403.3 290 67.9
Solyc11g006860.2 Solanum lycopersicum HOM05D005598 ORTHO05D006587 1.5e-110 403.3 291 67.7
PGSC0003DMG400023970 Solanum tuberosum HOM05D005598 ORTHO05D006587 1.5e-110 403.3 291 67.7
Phvul.007G022800 Phaseolus vulgaris HOM05D005598 ORTHO05D006587 2.6e-110 402.5 294 68.0
arahy.Tifrunner.gnm1.ann1.L8YGTT Arachis hypogaea HOM05D005598 ORTHO05D006587 5.8e-110 401.4 291 68.0
AUR62042081 Chenopodium quinoa HOM05D005598 ORTHO05D006587 5.8e-110 401.4 292 68.5
DCAR_006354 Daucus carota HOM05D005598 ORTHO05D006587 9.8e-110 400.6 291 67.4
Sed0022725 Sechium edule HOM05D005598 ORTHO05D006587 9.8e-110 400.6 291 67.4
VMungo0720G0111 Vigna mungo HOM05D005598 ORTHO05D006587 1.3e-109 400.2 293 67.6
FAN11G2626 Fragaria x ananassa HOM05D005598 ORTHO05D006587 1.7e-109 399.8 291 68.4
HPP92_000055 Vanilla planifolia HOM05D005598 ORTHO05D006587 1.1e-108 397.1 290 66.2
ATR0820G296 Amborella trichopoda HOM05D005598 ORTHO05D006587 2.4e-108 396.0 290 66.6
CDE08G1414 Ceratophyllum demersum HOM05D005598 ORTHO05D006587 2.4e-108 396.0 291 67.0
ClCG07G015650 Citrullus lanatus HOM05D005598 ORTHO05D006587 2.4e-108 396.0 322 62.7
FvH4_3g27560 Fragaria vesca HOM05D005598 ORTHO05D006587 5.4e-108 394.8 291 67.7
Oeu024809.1 Olea europaea HOM05D005598 ORTHO05D006587 3.9e-106 388.7 324 60.5
SGA_v2.0_scaffold62G21319 Striga asiatica HOM05D005598 ORTHO05D006587 1.5e-105 386.7 263 70.7
Lalb_Chr02g0146251 Lupinus albus HOM05D005598 ORTHO05D006587 1.9e-105 386.3 291 66.7
FAN16G3025 Fragaria x ananassa HOM05D005598 ORTHO05D006587 7.3e-105 384.4 290 66.2
Os11g0153900 Oryza sativa ssp. japonica HOM05D005598 ORTHO05D006587 2.8e-104 382.5 291 65.3
Manes.10G062100 Manihot esculenta HOM05D005598 ORTHO05D006587 3.6e-104 382.1 271 69.4
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 2.3e-103 379.4 274 69.0
Nitab4.5_0002586g0090 Nicotiana tabacum HOM05D005598 ORTHO05D006587 3.1e-103 379.0 326 60.1
vmacro10312 Vaccinium macrocarpon HOM05D005598 ORTHO05D006587 3.1e-103 379.0 291 64.6
Dinv11826 Davidia involucrata HOM05D005598 ORTHO05D006587 8.3e-101 370.9 262 70.6
CSS0039611 Camellia sinensis var. sinensis HOM05D005598 ORTHO05D006587 6.0e-99 364.8 304 60.9
SEGI_12354 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 6.0e-99 364.8 286 61.5
unitig_736.g22318 Utricularia gibba HOM05D005598 ORTHO05D006587 1.0e-98 364.0 292 63.0
PSO801G0206 Papaver somniferum HOM05D005598 ORTHO05D006587 5.0e-98 361.7 231 74.5
Actinidia34728 Actinidia chinensis HOM05D005598 ORTHO05D006587 2.5e-97 359.4 242 71.5
Dinv10930 Davidia involucrata HOM05D005598 ORTHO05D006587 6.2e-96 354.8 232 72.4
Glyma.10G278500 Glycine max HOM05D005598 ORTHO05D006587 1.4e-95 353.6 270 67.0
AL4G16260 Arabidopsis lyrata HOM05D005598 ORTHO05D006587 8.3e-93 344.4 192 87.5
Prupe.2G069600 Prunus persica HOM05D005598 ORTHO05D006587 1.9e-92 343.2 231 70.6
Zm00001eb406890 Zea mays HOM05D005598 ORTHO05D006587 2.1e-91 339.7 267 62.9
MBI01_g02157_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 6.2e-88 328.2 246 66.3
Cpa.g.c34135 Carica papaya HOM05D005598 ORTHO05D006587 8.1e-88 327.8 221 73.3
Pp3c13_7860 Physcomitrium patens HOM05D005598 ORTHO05D006587 1.2e-83 313.9 288 54.9
AagrBONN_evm.TU.Sc2ySwM_362.477 Anthoceros agrestis HOM05D005598 ORTHO05D006587 5.6e-81 305.1 286 53.5
Mapoly0006s0052 Marchantia polymorpha HOM05D005598 ORTHO05D006587 9.6e-81 304.3 288 53.5
Psat0s4121g0080 Pisum sativum HOM05D005598 ORTHO05D006587 9.0e-79 297.7 230 63.9
AUR62041514 Chenopodium quinoa HOM05D005598 ORTHO05D006587 2.1e-75 286.6 401 43.9
DCAR_006363 Daucus carota HOM05D005598 ORTHO05D006587 2.8e-64 249.6 281 52.3
SMO347G0320 Selaginella moellendorffii HOM05D005598 ORTHO05D006587 6.9e-63 245.0 253 53.4
CiPaw.14G033400 Carya illinoinensis HOM05D005598 ORTHO05D006587 3.3e-49 199.5 254 49.6
Cre17.g701350 Chlamydomonas reinhardtii HOM05D005598 ORTHO05D006587 8.2e-48 194.9 289 37.7
Psat4g059000 Pisum sativum HOM05D005598 ORTHO05D006587 2.0e-46 190.3 117 70.9
Haze_26455 Corylus avellana HOM05D005598 ORTHO05D006587 2.9e-45 186.4 243 42.4
Lalb_Chr21g0309151 Lupinus albus HOM05D005598 ORTHO05D006587 6.7e-42 175.3 153 62.7
Ah.04g160180 Amaranthus hybridus HOM05D005598 ORTHO05D006587 1.9e-36 157.1 118 66.1
CBR_g29781 Chara braunii HOM05D005598 ORTHO05D006587 3.2e-36 156.4 194 46.9
Cfa026153 Carpinus fangiana HOM05D005598 ORTHO05D006587 1.5e-33 147.5 235 39.6
MD02G1261400 Malus domestica HOM05D005598 ORTHO05D006587 2.4e-31 140.2 153 49.7
HanXRQChr05g0158341 Helianthus annuus HOM05D005598 ORTHO05D006587 9.1e-31 138.3 111 63.1
Glyma.07G162800 Glycine max HOM05D005598 ORTHO05D006587 3.8e-29 132.9 146 52.7
Psat0s449g0080 Pisum sativum HOM05D000909 ORTHO05D000928 1.5e-25 120.9 63 84.1
Psat0s1058g0040 Pisum sativum HOM05D005598 ORTHO05D006587 3.6e-19 99.8 52 84.6
Zm00001eb407010 Zea mays HOM05D005598 ORTHO05D006587 8.0e-19 98.6 71 71.8
SEGI_12669 Sequoiadendron giganteum HOM05D005598 ORTHO05D006587 2.4e-15 87.0 47 76.6
Psat4g071240 Pisum sativum HOM05D005598 ORTHO05D006587 5.3e-15 85.9 171 35.1
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 2.0e-14 84.0 45 77.8
MBI01_g19134_MAGBIO Magnolia biondii HOM05D005598 ORTHO05D006587 2.7e-14 83.6 46 80.4
Psat5g299440 Pisum sativum HOM05D005598 ORTHO05D006587 2.1e-11 73.9 108 39.8
Lsat_1_v5_gn_9_94660 Lactuca sativa HOM05D005598 ORTHO05D006587 3.6e-11 73.2 51 68.6
Sabra10G0187600 Salix brachista HOM05D005598 ORTHO05D006587 8.0e-11 72.0 59 55.9
Lalb_Chr21g0309141 Lupinus albus HOM05D005598 ORTHO05D006587 4.0e-10 69.7 45 71.1
Pp3c2_19600 Physcomitrium patens HOM05D016613 ORTHO05D014817 7.5e-09 65.5 157 31.8
A09p55890 Brassica napus HOM05D005598 ORTHO05D040595 1.7e-08 64.3 77 45.5
BraA09t40992Z Brassica rapa HOM05D005598 ORTHO05D040595 2.8e-08 63.5 61 54.1
Cre13.g561900 Chlamydomonas reinhardtii HOM05D016613 ORTHO05D014817 4.8e-08 62.8 152 32.2
Mapoly0023s0164 Marchantia polymorpha HOM05D016613 ORTHO05D014817 6.3e-08 62.4 167 31.7
Lalb_Chr21g0309161 Lupinus albus HOM05D005598 ORTHO05D006587 8.3e-08 62.0 79 46.8
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 1.6e-06 57.8 25 92.0
SMO118G0286 Selaginella moellendorffii HOM05D016613 ORTHO05D014817 1.6e-06 57.8 150 30.0


User provided reference genes

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