Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.10G033600 Theobroma cacao HOM05D001260 ORTHO05D004134 1.5e-84 316.2 170 100.0
Thecc.10G033200 Theobroma cacao HOM05D001260 ORTHO05D004134 8.9e-53 210.7 139 84.2
Duzib114G0845 Durio zibethinus HOM05D001260 ORTHO05D004134 1.5e-52 209.9 139 83.5
Gohir.D05G301900 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.7e-48 196.4 139 79.1
Gorai.009G320000 Gossypium raimondii HOM05D001260 ORTHO05D004134 1.7e-48 196.4 139 79.1
Gohir.A10G224000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 1.1e-47 193.7 139 77.0
Gohir.D10G237000 Gossypium hirsutum HOM05D001260 ORTHO05D004134 3.3e-47 192.2 139 77.0
Gohir.A05G302400 Gossypium hirsutum HOM05D001260 ORTHO05D004134 5.6e-47 191.4 139 77.7
Gorai.011G270700 Gossypium raimondii HOM05D001260 ORTHO05D004134 1.2e-46 190.3 139 75.5
CiPaw.01G292400 Carya illinoinensis HOM05D001260 ORTHO05D004134 1.0e-45 187.2 129 79.1
Gorai.011G270300 Gossypium raimondii HOM05D001260 ORTHO05D004134 8.9e-45 184.1 126 80.2
Gorai.011G270500 Gossypium raimondii HOM05D001260 ORTHO05D004134 3.4e-44 182.2 123 81.3
COL.COLO4_25532 Corchorus olitorius HOM05D001260 ORTHO05D004134 5.8e-44 181.4 123 79.7
Sabra08G0044800 Salix brachista HOM05D001260 ORTHO05D004134 5.8e-44 181.4 149 69.8
Potri.008G060700 Populus trichocarpa HOM05D001260 ORTHO05D004134 3.7e-43 178.7 149 69.1
QL08p061745 Quercus lobata HOM05D001260 ORTHO05D004134 4.9e-43 178.3 151 70.2
Ciclev10033559m.g Citrus clementina HOM05D001260 ORTHO05D004134 1.4e-42 176.8 143 70.6
Manes.10G022400 Manihot esculenta HOM05D001260 ORTHO05D004134 2.4e-42 176.0 129 76.7
TWI63G0278 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 7.0e-42 174.5 150 69.3
MD01G1140700 Malus domestica HOM05D001260 ORTHO05D004134 1.2e-41 173.7 146 68.5
TWI38G0285 Tripterygium wilfordii HOM05D001260 ORTHO05D004134 3.5e-41 172.2 130 73.8
Atru.chr12.295 Acer truncatum HOM05D001260 ORTHO05D004134 4.6e-41 171.8 130 73.1
Atru.chr12.334 Acer truncatum HOM05D001260 ORTHO05D004134 4.6e-41 171.8 130 73.1
MD07G1205000 Malus domestica HOM05D001260 ORTHO05D004134 1.3e-40 170.2 149 66.4
Manes.07G121400 Manihot esculenta HOM05D001260 ORTHO05D004134 3.0e-40 169.1 151 66.2
Sed0004245 Sechium edule HOM05D001260 ORTHO05D004134 5.0e-40 168.3 129 73.6
CSS0048341 Camellia sinensis var. sinensis HOM05D001260 ORTHO05D004134 1.5e-39 166.8 186 58.6
Dinv16267 Davidia involucrata HOM05D001260 ORTHO05D004134 1.9e-39 166.4 150 66.7
FAN03G2667 Fragaria x ananassa HOM05D001260 ORTHO05D004134 1.9e-39 166.4 149 67.1
Cpa.g.sc19.263 Carica papaya HOM05D001260 ORTHO05D004134 3.3e-39 165.6 130 73.1
GSVIVG01016463001 Vitis vinifera HOM05D001260 ORTHO05D004134 5.6e-39 164.9 131 71.8
FvH4_7g23510 Fragaria vesca HOM05D001260 ORTHO05D004134 9.5e-39 164.1 149 66.4
FAN06G4376 Fragaria x ananassa HOM05D001260 ORTHO05D004134 9.5e-39 164.1 149 66.4
FAN10G0370 Fragaria x ananassa HOM05D001260 ORTHO05D004134 9.5e-39 164.1 149 66.4
RcHm_v2.0_Chr1g0368661 Rosa chinensis HOM05D001260 ORTHO05D004134 1.2e-38 163.7 149 66.4
FAN06G3528 Fragaria x ananassa HOM05D001260 ORTHO05D004134 1.6e-38 163.3 149 66.4
Lalb_Chr04g0250961 Lupinus albus HOM05D001260 ORTHO05D004134 1.6e-38 163.3 147 66.7
Sed0007578 Sechium edule HOM05D001260 ORTHO05D004134 2.1e-38 162.9 129 69.8
CANSAT56G4350 Cannabis sativa HOM05D001260 ORTHO05D004134 1.1e-37 160.6 150 65.3
Cc02_g07290 Coffea canephora HOM05D001260 ORTHO05D004134 1.1e-37 160.6 131 71.0
MELO3C008247.2 Cucumis melo HOM05D001260 ORTHO05D004134 1.1e-37 160.6 129 69.8
VMungo0647G2094 Vigna mungo HOM05D001260 ORTHO05D004134 2.3e-37 159.5 129 72.1
FvH4_7g23851 Fragaria vesca HOM05D001260 ORTHO05D004134 4.0e-37 158.7 149 64.4
Glyma.02G251500 Glycine max HOM05D001260 ORTHO05D004134 4.0e-37 158.7 129 74.4
Nn2g13504 Nelumbo nucifera HOM05D001260 ORTHO05D004134 4.0e-37 158.7 132 72.7
Glyma.14G065300 Glycine max HOM05D001260 ORTHO05D004134 5.2e-37 158.3 129 74.4
CsaV3_6G001430 Cucumis sativus L. HOM05D001260 ORTHO05D004134 6.8e-37 157.9 129 69.0
Eucgr.J02123 Eucalyptus grandis HOM05D001260 ORTHO05D004134 8.9e-37 157.5 130 69.2
TAR369G0466 Trochodendron aralioides HOM05D001260 ORTHO05D004134 8.9e-37 157.5 132 71.2
Lalb_Chr17g0346411 Lupinus albus HOM05D001260 ORTHO05D004134 1.2e-36 157.1 129 70.5
Duzib128G0118 Durio zibethinus HOM05D001260 ORTHO05D004134 2.0e-36 156.4 105 80.0
Migut.F00740 Erythranthe guttata HOM05D001260 ORTHO05D004134 2.6e-36 156.0 131 67.9
Phvul.008G230000 Phaseolus vulgaris HOM05D001260 ORTHO05D004134 2.6e-36 156.0 129 72.1
Hma1.2p1_0039F.1_g024740 Hydrangea macrophylla HOM05D001260 ORTHO05D004134 4.4e-36 155.2 131 68.7
Gohir.D10G236624 Gossypium hirsutum HOM05D001260 ORTHO05D004134 5.8e-36 154.8 97 85.6
LjContig00141g0022758 Lotus japonicus HOM05D001260 ORTHO05D004134 1.3e-35 153.7 129 67.4
DCAR_011747 Daucus carota HOM05D001260 ORTHO05D004134 2.9e-35 152.5 130 68.5
Rhsim03G0137000 Rhododendron simsii HOM05D001260 ORTHO05D004134 2.9e-35 152.5 131 70.2
ClCG11G006570 Citrullus lanatus HOM05D001260 ORTHO05D004134 5.4e-34 148.3 155 58.7
Lalb_Chr10g0104791 Lupinus albus HOM05D001260 ORTHO05D004134 5.4e-34 148.3 167 56.9
Medtr5g081240 Medicago truncatula HOM05D001260 ORTHO05D004134 5.4e-34 148.3 161 59.6
Ca_05847_v3 Cicer arietinum L. HOM05D001260 ORTHO05D004134 2.7e-33 146.0 129 67.4
Sp3g09610 Schrenkiella parvula HOM05D001260 ORTHO05D004134 1.3e-32 143.7 130 60.0
Thhalv10012734m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 1.7e-32 143.3 132 65.2
THA.LOC104826868 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 1.7e-32 143.3 130 62.3
TPR.G25828 Trifolium pratense HOM05D001260 ORTHO05D004134 3.0e-32 142.5 129 63.6
Aa31LG11G7010 Aethionema arabicum HOM05D001260 ORTHO05D004134 3.9e-32 142.1 132 62.1
Oeu039009.1 Olea europaea HOM05D001260 ORTHO05D004134 3.9e-32 142.1 131 64.1
GSVIVG01008874001 Vitis vinifera HOM05D001260 ORTHO05D004134 1.5e-31 140.2 150 62.0
CAN.G986.45 Capsicum annuum HOM05D001260 ORTHO05D004134 1.9e-31 139.8 130 61.5
CAN.G986.46 Capsicum annuum HOM05D001260 ORTHO05D004134 1.9e-31 139.8 130 61.5
Psat7g258880 Pisum sativum HOM05D001260 ORTHO05D004134 2.5e-31 139.4 129 63.6
Carub.0006s0486 Capsella rubella HOM05D001260 ORTHO05D004134 4.3e-31 138.7 129 62.8
THA.LOC104816577 Tarenaya hassleriana HOM05D001260 ORTHO05D004134 4.3e-31 138.7 130 57.7
Ciclev10030832m.g Citrus clementina HOM05D001260 ORTHO05D004134 9.5e-31 137.5 178 51.7
AT5G05970 Arabidopsis thaliana HOM05D001260 ORTHO05D004134 1.6e-30 136.7 129 61.2
AL6G15910 Arabidopsis lyrata HOM05D001260 ORTHO05D004134 2.1e-30 136.3 132 62.1
BolC9t59841H Brassica oleracea HOM05D001260 ORTHO05D004134 2.1e-30 136.3 129 61.2
FAN01G0960 Fragaria x ananassa HOM05D001260 ORTHO05D004134 2.8e-30 136.0 208 47.6
C09p70820 Brassica napus HOM05D001260 ORTHO05D004134 3.6e-30 135.6 129 62.0
Thhalv10020101m.g Eutrema salsugineum HOM05D001260 ORTHO05D004134 3.6e-30 135.6 136 55.9
PGR044G1255 Punica granatum HOM05D001260 ORTHO05D004134 3.6e-30 135.6 129 65.1
BcaB06g25631 Brassica carinata HOM05D001260 ORTHO05D004134 6.2e-30 134.8 130 60.8
BcaNung07355 Brassica carinata HOM05D001260 ORTHO05D004134 6.2e-30 134.8 130 60.8
C05p56770 Brassica napus HOM05D001260 ORTHO05D004134 6.2e-30 134.8 130 60.8
BolC5t34341H Brassica oleracea HOM05D001260 ORTHO05D004134 6.2e-30 134.8 130 60.8
MSTRG.259 Avicennia marina HOM05D001260 ORTHO05D004134 8.1e-30 134.4 180 50.6
TPR.G1704 Trifolium pratense HOM05D001260 ORTHO05D004134 8.1e-30 134.4 129 61.2
A05p38010 Brassica napus HOM05D001260 ORTHO05D004134 1.1e-29 134.0 130 60.8
BraA05t22592Z Brassica rapa HOM05D001260 ORTHO05D004134 1.1e-29 134.0 130 60.8
Oeu001521.1 Olea europaea HOM05D001260 ORTHO05D004134 1.8e-29 133.3 127 63.0
A10p30380 Brassica napus HOM05D001260 ORTHO05D004134 2.3e-29 132.9 129 64.3
ECA233G1462 Erigeron canadensis HOM05D001260 ORTHO05D004134 3.1e-29 132.5 147 55.8
HPP92_020548 Vanilla planifolia HOM05D001260 ORTHO05D004134 3.1e-29 132.5 153 54.9
arahy.Tifrunner.gnm1.ann1.1DVI41 Arachis hypogaea HOM05D001260 ORTHO05D004134 6.8e-29 131.3 121 67.8
BraA10t45077Z Brassica rapa HOM05D001260 ORTHO05D004134 8.9e-29 131.0 129 62.0
HanXRQChr08g0221231 Helianthus annuus HOM05D001260 ORTHO05D004134 8.9e-29 131.0 135 56.3
Sp6g36920 Schrenkiella parvula HOM05D001260 ORTHO05D004134 8.9e-29 131.0 152 56.6
arahy.Tifrunner.gnm1.ann1.TM7LMJ Arachis hypogaea HOM05D001260 ORTHO05D004134 1.2e-28 130.6 121 66.9
Aqoxy1G00447 Aquilegia oxysepala HOM05D001260 ORTHO05D004134 1.5e-28 130.2 151 56.3
Hund12217 Selenicereus undatus HOM05D001260 ORTHO05D004134 2.0e-28 129.8 131 57.3
AUR62030032 Chenopodium quinoa HOM05D001260 ORTHO05D004134 6.4e-27 124.8 131 55.0
CARHR207240 Cardamine hirsuta HOM05D001260 ORTHO05D004134 8.4e-27 124.4 170 51.8
Lsat_1_v5_gn_8_14640 Lactuca sativa HOM05D001260 ORTHO05D004134 8.4e-27 124.4 133 57.9
EL10Ac3g06309 Beta vulgaris HOM05D001260 ORTHO05D004134 2.4e-26 122.9 131 56.5
Hund22801 Selenicereus undatus HOM05D001260 ORTHO05D004134 2.4e-26 122.9 132 56.8
Sabra10G0152200 Salix brachista HOM05D001260 ORTHO05D004134 9.2e-26 120.9 168 53.0
BcaNung06227 Brassica carinata HOM05D001260 ORTHO05D004134 1.0e-24 117.5 166 53.0
Solyc03g079920.3 Solanum lycopersicum HOM05D001260 ORTHO05D004134 3.0e-24 115.9 130 53.8
Sopen03g027210 Solanum pennellii HOM05D001260 ORTHO05D004134 3.0e-24 115.9 130 53.8
ATR0559G059 Amborella trichopoda HOM05D001260 ORTHO05D004134 6.6e-24 114.8 133 53.4
Os09g0267500 Oryza sativa ssp. japonica HOM05D001260 ORTHO05D004134 3.6e-22 109.0 133 52.6
TAR636G2673 Trochodendron aralioides HOM05D001260 ORTHO05D004134 1.8e-21 106.7 96 65.6
PGSC0003DMG400021693 Solanum tuberosum HOM05D001260 ORTHO05D004134 2.4e-21 106.3 130 51.5
SalBow6G0807 Salvia bowleyana HOM05D001260 ORTHO05D004134 1.3e-19 100.5 131 53.4
Oeu031370.1 Olea europaea HOM05D001260 ORTHO05D004134 1.7e-19 100.1 99 61.6
AUR62002609 Chenopodium quinoa HOM05D001260 ORTHO05D004134 4.9e-19 98.6 98 57.1
SEGI_35518 Sequoiadendron giganteum HOM05D001260 ORTHO05D004134 2.1e-17 93.2 78 61.5
PSO384G2594 Papaver somniferum HOM05D001260 ORTHO05D004134 3.5e-17 92.4 128 49.2
PSO339G0232 Papaver somniferum HOM05D001260 ORTHO05D004134 7.8e-17 91.3 128 48.4
RcHm_v2.0_Chr4g0410241 Rosa chinensis HOM05D001260 ORTHO05D004134 7.8e-17 91.3 66 69.7
Nitab4.5_0004474g0060 Nicotiana tabacum HOM05D001260 ORTHO05D004134 1.0e-16 90.9 122 45.9
Nitab4.5_0000779g0070 Nicotiana tabacum HOM05D001260 ORTHO05D004134 1.7e-16 90.1 122 45.1
Gorai.011G270200 Gossypium raimondii HOM05D001260 ORTHO05D004134 8.7e-16 87.8 52 92.3
Pp3c3_3110 Physcomitrium patens HOM05D001260 ORTHO05D004134 1.5e-15 87.0 76 56.6
RcHm_v2.0_Chr1g0315431 Rosa chinensis HOM05D001260 ORTHO05D004134 2.5e-15 86.3 88 58.0
RcHm_v2.0_Chr1g0324411 Rosa chinensis HOM05D001260 ORTHO05D004134 2.5e-15 86.3 88 58.0
RcHm_v2.0_Chr1g0369591 Rosa chinensis HOM05D001260 ORTHO05D004134 4.3e-15 85.5 88 58.0
Pp3c26_11450 Physcomitrium patens HOM05D001260 ORTHO05D004134 2.1e-14 83.2 129 38.8
SMO271G0180 Selaginella moellendorffii HOM05D001260 ORTHO05D004134 3.6e-14 82.4 154 39.6
Mapoly0118s0019 Marchantia polymorpha HOM05D001260 ORTHO05D004134 8.1e-14 81.3 108 47.2
Pp3c4_30600 Physcomitrium patens HOM05D001260 ORTHO05D004134 1.4e-13 80.5 86 50.0
Pp3c13_5000 Physcomitrium patens HOM05D001260 ORTHO05D004134 1.8e-13 80.1 168 35.7
AagrBONN_evm.TU.Sc2ySwM_344.891 Anthoceros agrestis HOM05D001260 ORTHO05D004134 9.9e-12 74.3 75 48.0
Rhsim08G0019600 Rhododendron simsii HOM05D001260 ORTHO05D004134 3.5e-09 65.9 130 41.5
CBR_g37200 Chara braunii HOM05D001260 ORTHO05D004134 4.6e-09 65.5 81 39.5
Rhsim04G0027700 Rhododendron simsii HOM05D001260 ORTHO05D004134 2.3e-08 63.2 56 58.9


User provided reference genes

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