Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 8.4e-170 600.9 469 100.0
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 1.1e-129 467.6 470 76.8
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 5.3e-116 422.2 379 81.8
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.7e-107 393.3 369 74.5
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 5.0e-106 389.0 368 76.4
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.9e-105 387.1 366 76.2
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.2e-104 384.4 470 72.3
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.1e-97 361.3 376 66.5
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 9.5e-97 358.2 470 73.0
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 6.1e-96 355.5 470 72.8
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 4.4e-94 349.4 383 62.1
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 1.3e-93 347.8 382 60.5
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 1.7e-93 347.4 369 58.8
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 4.6e-91 339.3 385 62.9
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 7.8e-91 338.6 373 63.0
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 3.9e-90 336.3 372 69.1
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.5e-89 334.3 372 62.4
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 1.9e-89 334.0 373 63.5
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.6e-88 330.9 391 50.4
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 8.0e-88 328.6 399 50.9
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.1e-87 328.2 384 57.6
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 1.4e-87 327.8 369 64.2
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 1.8e-87 327.4 371 65.2
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.1e-87 326.6 380 60.5
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 4.0e-87 326.2 376 64.6
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 8.9e-87 325.1 373 62.2
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 8.9e-87 325.1 382 57.3
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.3e-85 321.2 470 65.7
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.7e-85 320.9 473 64.9
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 6.4e-85 318.9 374 63.1
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 3.2e-84 316.6 370 65.9
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.1e-84 316.2 334 64.7
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 7.1e-84 315.5 390 61.0
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 1.6e-83 314.3 372 62.6
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 2.1e-83 313.9 373 61.7
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 2.7e-83 313.5 376 61.7
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 3.5e-83 313.2 373 59.0
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 2.3e-82 310.5 345 65.5
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 2.3e-82 310.5 373 59.0
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 3.0e-82 310.1 333 58.6
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 3.9e-82 309.7 387 62.3
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 5.1e-82 309.3 373 61.9
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 6.6e-82 308.9 385 59.0
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 1.9e-81 307.4 382 52.1
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 3.3e-81 306.6 377 57.3
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 7.3e-81 305.4 400 56.2
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 9.5e-81 305.1 384 52.3
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 1.6e-80 304.3 404 57.2
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 1.6e-80 304.3 377 56.5
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 1.6e-80 304.3 377 63.7
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 2.8e-80 303.5 375 57.6
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 2.8e-80 303.5 372 50.5
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 4.7e-80 302.8 374 66.6
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 2.3e-79 300.4 371 60.4
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 5.2e-79 299.3 372 55.6
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 2.0e-78 297.4 393 59.3
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 4.4e-78 296.2 408 55.4
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 9.9e-78 295.0 404 54.2
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 8.3e-77 292.0 378 50.5
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 8.3e-77 292.0 386 55.2
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 8.3e-77 292.0 388 53.4
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 1.9e-76 290.8 376 63.0
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 5.4e-76 289.3 376 60.9
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 9.2e-76 288.5 398 52.3
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 9.2e-76 288.5 369 59.9
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.6e-75 287.7 385 59.5
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 3.5e-75 286.6 355 62.3
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 1.7e-74 284.3 374 58.8
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 5.1e-74 282.7 385 57.4
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 6.6e-74 282.3 364 61.3
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 1.1e-73 281.6 378 64.0
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 2.5e-73 280.4 359 56.8
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 5.6e-73 279.3 375 66.4
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 7.3e-73 278.9 383 51.2
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 1.2e-72 278.1 369 58.0
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 1.6e-72 277.7 231 75.3
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 1.6e-72 277.7 181 79.6
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 6.2e-72 275.8 384 53.9
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 6.2e-72 275.8 384 54.2
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 8.1e-72 275.4 379 55.4
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 8.1e-72 275.4 350 55.7
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 1.8e-71 274.2 376 52.7
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 1.8e-71 274.2 379 56.5
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 3.1e-71 273.5 399 56.1
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 8.9e-71 271.9 378 51.1
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 2.0e-70 270.8 380 58.7
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 2.0e-70 270.8 394 56.9
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 2.6e-70 270.4 412 53.2
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 3.4e-70 270.0 378 51.9
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 4.4e-70 269.6 371 53.6
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 5.8e-70 269.2 394 55.6
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 9.9e-70 268.5 337 64.4
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 9.9e-70 268.5 382 51.8
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 3.8e-69 266.5 270 54.4
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 3.8e-69 266.5 354 56.8
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 4.9e-69 266.2 381 54.1
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 6.4e-69 265.8 383 58.0
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 6.4e-69 265.8 373 57.4
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.1e-68 265.0 373 60.6
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.1e-68 265.0 373 60.6
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 1.4e-68 264.6 268 63.4
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 5.4e-68 262.7 374 53.7
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 7.1e-68 262.3 393 50.6
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 9.3e-68 261.9 372 55.1
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 9.3e-68 261.9 413 58.1
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 3.5e-67 260.0 389 55.8
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 6.0e-67 259.2 375 59.7
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 1.7e-66 257.7 373 63.8
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 3.9e-66 256.5 378 59.3
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.1e-65 255.0 373 63.0
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.5e-65 254.6 369 64.0
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 1.5e-65 254.6 379 56.7
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 5.6e-65 252.7 389 56.8
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.2e-62 245.0 269 62.1
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 4.4e-62 243.0 369 63.1
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 9.9e-62 241.9 341 54.0
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 1.3e-61 241.5 401 50.6
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 2.9e-61 240.4 166 69.3
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 8.4e-61 238.8 370 50.0
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 1.4e-60 238.0 421 53.9
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.4e-60 236.1 363 51.8
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 9.3e-60 235.3 399 46.6
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 1.2e-59 235.0 259 64.9
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 1.0e-58 231.9 384 53.6
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 6.6e-58 229.2 278 53.2
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.9e-57 227.6 382 51.6
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 5.6e-57 226.1 416 52.2
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.8e-56 223.8 363 52.3
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.0e-54 217.6 354 50.6
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 7.6e-54 215.7 225 54.2
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 2.9e-53 213.8 377 56.5
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 3.8e-53 213.4 369 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 8.7e-50 202.2 161 65.8
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 1.6e-48 198.0 156 67.9
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 1.8e-47 194.5 269 52.0
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.5e-46 191.4 176 64.8
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 1.3e-45 188.3 121 71.1
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.6e-43 181.4 325 43.1
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 1.9e-41 174.5 268 47.4
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 5.7e-41 172.9 327 41.6
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 1.0e-37 162.2 271 49.8
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 3.8e-37 160.2 302 50.3
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 5.5e-28 129.8 157 58.6
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.7e-27 127.5 101 66.3
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 2.7e-27 127.5 281 41.6
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 6.7e-26 122.9 164 59.1
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 3.4e-22 110.5 280 35.7
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 5.5e-20 103.2 163 68.1
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 1.0e-18 99.0 140 45.0
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 1.8e-18 98.2 247 44.1
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 6.7e-18 96.3 97 44.3
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 3.3e-17 94.0 308 36.4
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 5.7e-09 66.6 96 41.7
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 1.7e-08 65.1 92 43.5
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 1.7e-08 65.1 102 38.2
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 3.7e-08 63.9 93 40.9
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 1.4e-07 62.0 93 39.8
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 1.4e-07 62.0 93 40.9
FAN17G2909 Fragaria x ananassa HOM05D005264 ORTHO05D005428 2.4e-07 61.2 103 38.8
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 2.4e-07 61.2 40 67.5
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 5.3e-07 60.1 40 60.0
Potri.010G170700 Populus trichocarpa HOM05D005264 ORTHO05D005428 2.0e-06 58.2 93 39.8
Zm00001eb104370 Zea mays HOM05D005264 ORTHO05D005428 2.0e-06 58.2 34 70.6
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 2.7e-06 57.8 35 68.6
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 3.5e-06 57.4 93 40.9
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 4.5e-06 57.0 93 37.6
Gohir.D08G167332 Gossypium hirsutum HOM05D005264 ORTHO05D005428 5.9e-06 56.6 93 39.8
TAR622G0680 Trochodendron aralioides HOM05D005264 ORTHO05D005428 5.9e-06 56.6 99 36.4
PSO063G3914 Papaver somniferum HOM05D005264 ORTHO05D005428 7.7e-06 56.2 34 64.7
PSO782G4655 Papaver somniferum HOM05D005264 ORTHO05D005428 7.7e-06 56.2 34 64.7


User provided reference genes

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