Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G327500 Theobroma cacao HOM05D006496 ORTHO05D008390 1.8e-130 469.2 225 100.0
Duzib168G2252 Durio zibethinus HOM05D006496 ORTHO05D008390 7.3e-63 244.6 182 67.6
COL.COLO4_18451 Corchorus olitorius HOM05D006496 ORTHO05D008390 6.4e-59 231.5 188 63.3
Atru.chr3.3823 Acer truncatum HOM05D006496 ORTHO05D008390 1.1e-37 161.0 200 50.0
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 1.5e-36 157.1 206 46.1
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 2.0e-36 156.8 211 45.5
Ciclev10028859m.g Citrus clementina HOM05D006496 ORTHO05D008390 5.0e-35 152.1 172 52.3
CiPaw.13G099300 Carya illinoinensis HOM05D006496 ORTHO05D008390 1.0e-32 144.4 174 46.6
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 2.8e-30 136.3 179 46.9
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 3.7e-30 136.0 183 43.2
Prupe.6G084300 Prunus persica HOM05D006496 ORTHO05D008390 5.0e-27 125.6 177 45.8
QL01p033212 Quercus lobata HOM05D006496 ORTHO05D008390 9.4e-26 121.3 154 46.8
MD11G1113700 Malus domestica HOM05D006496 ORTHO05D008390 7.9e-25 118.2 192 42.7
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 8.8e-24 114.8 135 44.4
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 1.5e-23 114.0 178 44.9
FAN16G0777 Fragaria x ananassa HOM05D006496 ORTHO05D008390 2.5e-23 113.2 154 40.9
RcHm_v2.0_Chr5g0062931 Rosa chinensis HOM05D006496 ORTHO05D008390 1.7e-22 110.5 207 36.2
Prupe.6G084200 Prunus persica HOM05D006496 ORTHO05D008390 2.2e-22 110.2 161 44.7
RcHm_v2.0_Chr5g0062921 Rosa chinensis HOM05D006496 ORTHO05D008390 9.1e-21 104.8 148 44.6
CARHR273380 Cardamine hirsuta HOM05D006496 ORTHO05D008390 3.4e-20 102.8 174 40.2
CSS0000664 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 2.2e-19 100.1 167 37.7
MD03G1099400 Malus domestica HOM05D006496 ORTHO05D008390 3.8e-19 99.4 190 41.1
BcaC04g19631 Brassica carinata HOM05D006496 ORTHO05D008390 5.0e-19 99.0 184 39.1
C09p52290 Brassica napus HOM05D006496 ORTHO05D008390 1.4e-18 97.4 184 39.1
BolC9t58098H Brassica oleracea HOM05D006496 ORTHO05D008390 1.4e-18 97.4 184 39.1
FAN25G3002 Fragaria x ananassa HOM05D006496 ORTHO05D008390 1.9e-18 97.1 197 38.6
Rhsim13G0086700 Rhododendron simsii HOM05D006496 ORTHO05D008390 5.5e-18 95.5 247 32.8
Nitab4.5_0003498g0030 Nicotiana tabacum HOM05D006496 ORTHO05D008390 7.2e-18 95.1 173 36.4
BraA10t43786Z Brassica rapa HOM05D006496 ORTHO05D008390 1.6e-17 94.0 184 38.6
A10p17060 Brassica napus HOM05D006496 ORTHO05D008390 3.6e-17 92.8 184 38.0
FvH4_3g35002 Fragaria vesca HOM05D006496 ORTHO05D008390 3.6e-17 92.8 197 38.6
FAN11G2800 Fragaria x ananassa HOM05D006496 ORTHO05D008390 3.6e-17 92.8 197 38.6
Thhalv10014093m.g Eutrema salsugineum HOM05D006496 ORTHO05D008390 4.7e-17 92.4 168 41.7
Sp6g21470 Schrenkiella parvula HOM05D006496 ORTHO05D008390 6.1e-17 92.0 200 33.0
Medtr2g096520 Medicago truncatula HOM05D006496 ORTHO05D008390 1.0e-16 91.3 142 40.8
Oeu058535.1 Olea europaea HOM05D006496 ORTHO05D008390 1.4e-16 90.9 165 38.8
Actinidia37238 Actinidia chinensis HOM05D006496 ORTHO05D008390 1.8e-16 90.5 198 35.4
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.8e-16 90.5 132 42.4
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 1.8e-16 90.5 213 34.3
Actinidia07064 Actinidia chinensis HOM05D006496 ORTHO05D008390 5.1e-16 89.0 183 35.5
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.1e-15 87.8 162 36.4
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.1e-15 87.8 133 39.8
BcaB08g36218 Brassica carinata HOM05D006496 ORTHO05D008390 1.5e-15 87.4 154 37.0
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 1.5e-15 87.4 140 37.9
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 2.0e-15 87.0 123 43.1
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 2.0e-15 87.0 181 37.0
BolC3t13791H Brassica oleracea HOM05D006496 ORTHO05D008390 2.6e-15 86.7 203 33.5
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 3.3e-15 86.3 200 36.0
C03p13280 Brassica napus HOM05D006496 ORTHO05D008390 3.3e-15 86.3 207 32.9
BcaC01g06549 Brassica carinata HOM05D006496 ORTHO05D008390 5.7e-15 85.5 213 33.8
Peaxi162Scf00411g00117 Petunia axillaris HOM05D006496 ORTHO05D008390 5.7e-15 85.5 159 35.2
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 9.7e-15 84.7 216 30.1
HanXRQChr01g0009851 Helianthus annuus HOM05D006496 ORTHO05D008390 1.3e-14 84.3 147 36.1
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 1.7e-14 84.0 227 32.6
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 2.8e-14 83.2 177 35.0
Carub.0008s2046 Capsella rubella HOM05D006496 ORTHO05D008390 3.7e-14 82.8 123 41.5
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 3.7e-14 82.8 216 31.5
FAN25G1110 Fragaria x ananassa HOM05D006496 ORTHO05D008390 6.3e-14 82.0 191 31.9
Lj2A1055T49 Lonicera japonica HOM05D006496 ORTHO05D008390 6.3e-14 82.0 176 33.5
Psat5g284080 Pisum sativum HOM05D006496 ORTHO05D008390 6.3e-14 82.0 137 36.5
Cc01_g12300 Coffea canephora HOM05D006496 ORTHO05D008390 7.0e-13 78.6 223 27.8
Lsat_1_v5_gn_9_22140 Lactuca sativa HOM05D006496 ORTHO05D008390 2.0e-12 77.0 202 29.7
THA.LOC104810806 Tarenaya hassleriana HOM05D006496 ORTHO05D008390 2.6e-12 76.6 198 33.8
CAN.G420.5 Capsicum annuum HOM05D006496 ORTHO05D008390 1.0e-11 74.7 186 31.2
Migut.D02127 Erythranthe guttata HOM05D006496 ORTHO05D008390 6.5e-11 72.0 189 30.7
ECA247G0375 Erigeron canadensis HOM05D006496 ORTHO05D008390 2.5e-10 70.1 264 25.8
Cpa.g.sc190.31 Carica papaya HOM05D006496 ORTHO05D008390 7.2e-10 68.6 97 47.4
ECA248G1113 Erigeron canadensis HOM05D006496 ORTHO05D008390 9.4e-10 68.2 193 28.5
Sabra09G0018800 Salix brachista HOM05D006496 ORTHO05D008390 1.6e-09 67.4 60 51.7
HanXRQChr01g0009831 Helianthus annuus HOM05D006496 ORTHO05D008390 3.6e-09 66.2 175 28.0
A02p06850 Brassica napus HOM05D006496 ORTHO05D008390 1.4e-08 64.3 114 36.8
C02p12140 Brassica napus HOM05D006496 ORTHO05D008390 1.4e-08 64.3 114 36.8
Lsat_1_v5_gn_5_167360 Lactuca sativa HOM05D006496 ORTHO05D008390 4.0e-08 62.8 69 43.5
BraA02t05763Z Brassica rapa HOM05D006496 ORTHO05D008390 5.2e-08 62.4 114 36.0
PGSC0003DMG400015535 Solanum tuberosum HOM05D006496 ORTHO05D008390 2.0e-07 60.5 60 45.0
EL10Ac7g15965 Beta vulgaris HOM05D006496 ORTHO05D008390 3.3e-07 59.7 62 50.0
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 3.3e-07 59.7 143 29.4
Lj3g0009171 Lotus japonicus HOM05D006496 ORTHO05D008390 4.4e-07 59.3 86 41.9
arahy.Tifrunner.gnm1.ann1.7PT1R0 Arachis hypogaea HOM05D006496 ORTHO05D008390 5.7e-07 58.9 140 32.1
Ca_01342_v3 Cicer arietinum L. HOM05D006496 ORTHO05D008390 5.7e-07 58.9 64 48.4
Glyma.13G333300 Glycine max HOM05D006496 ORTHO05D008390 7.5e-07 58.5 147 29.3
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 9.7e-07 58.2 127 29.1
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 9.7e-07 58.2 62 37.1
Lj3g0006193 Lotus japonicus HOM05D006496 ORTHO05D008390 9.7e-07 58.2 93 36.6
Phvul.L002943 Phaseolus vulgaris HOM05D006496 ORTHO05D008390 9.7e-07 58.2 175 27.4
TPR.G34315 Trifolium pratense HOM05D006496 ORTHO05D008390 1.3e-06 57.8 77 39.0
Glyma.07G118700 Glycine max HOM05D006496 ORTHO05D008390 1.7e-06 57.4 101 40.6
Hma1.2p1_0035F.1_g022050 Hydrangea macrophylla HOM05D006496 ORTHO05D008390 1.7e-06 57.4 98 35.7
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 2.8e-06 56.6 92 33.7
Lalb_Chr22g0349991 Lupinus albus HOM05D006496 ORTHO05D008390 3.7e-06 56.2 109 32.1
DCAR_018892 Daucus carota HOM05D006496 ORTHO05D008390 4.8e-06 55.8 145 29.0
FAN11G0827 Fragaria x ananassa HOM05D006496 ORTHO05D008390 4.8e-06 55.8 76 39.5
Prupe.6G084500 Prunus persica HOM05D006496 ORTHO05D008390 6.3e-06 55.5 54 51.9
FvH4_3g35010 Fragaria vesca HOM05D006496 ORTHO05D008390 8.2e-06 55.1 63 41.3
FAN21G2388 Fragaria x ananassa HOM05D006496 ORTHO05D008390 8.2e-06 55.1 56 46.4


User provided reference genes

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