Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 1.2e-156 556.6 306 100.0
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 3.9e-152 541.6 274 98.9
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 1.1e-149 533.5 273 98.5
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.3e-149 531.2 277 96.0
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 2.6e-148 528.9 277 95.7
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.5e-148 528.1 277 95.7
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.0e-147 526.9 277 96.0
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.9e-147 525.4 278 95.3
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 6.5e-147 524.2 276 96.0
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 6.5e-147 524.2 305 94.4
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.5e-146 523.1 274 95.3
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 3.2e-146 521.9 275 95.6
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 3.2e-146 521.9 273 94.5
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 9.4e-146 520.4 273 95.6
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.6e-145 519.6 307 93.8
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 2.1e-145 519.2 273 94.9
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 2.7e-145 518.8 273 95.2
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 3.6e-145 518.5 274 94.5
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 6.1e-145 517.7 273 94.9
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 1.0e-144 516.9 273 94.5
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.4e-144 516.5 275 91.6
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.8e-144 516.2 273 94.5
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.8e-144 516.2 272 94.5
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 3.0e-144 515.4 274 94.9
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 5.2e-144 514.6 275 93.1
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 5.2e-144 514.6 275 93.1
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 5.2e-144 514.6 273 94.9
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 8.8e-144 513.8 274 94.5
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 9.7e-143 510.4 275 93.5
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.7e-142 509.6 275 91.6
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 2.2e-142 509.2 272 93.4
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.8e-142 508.8 275 91.6
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 5.3e-141 504.6 273 91.9
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 5.3e-141 504.6 273 91.9
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 9.1e-141 503.8 274 91.2
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.2e-140 503.4 272 92.6
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.2e-140 503.4 275 89.8
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 2.0e-140 502.7 274 90.9
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 5.9e-140 501.1 273 91.6
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 7.7e-140 500.7 273 91.2
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.3e-139 500.0 273 91.6
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 1.3e-139 500.0 273 89.7
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.3e-139 500.0 276 91.3
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.2e-139 499.2 300 86.3
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 8.5e-139 497.3 305 84.9
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 2.5e-138 495.7 274 91.2
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.6e-137 493.0 273 91.6
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 2.7e-137 492.3 276 88.0
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 6.1e-137 491.1 275 88.7
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 8.0e-137 490.7 267 90.6
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.0e-136 488.4 275 88.4
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 8.8e-136 487.3 276 86.6
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 1.5e-135 486.5 273 86.8
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 2.6e-135 485.7 272 87.1
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 7.5e-135 484.2 275 86.5
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.5e-135 484.2 273 89.0
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 9.8e-135 483.8 273 87.2
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 1.3e-134 483.4 275 88.4
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 2.2e-134 482.6 274 86.9
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.8e-134 482.3 279 89.6
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 4.8e-134 481.5 274 86.5
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 4.8e-134 481.5 273 86.4
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 6.3e-134 481.1 273 87.2
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 6.3e-134 481.1 318 78.0
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.1e-133 480.3 289 83.4
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.1e-133 480.3 275 88.0
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 1.4e-133 479.9 275 86.9
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 2.4e-133 479.2 275 86.2
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 9.1e-133 477.2 273 85.0
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 9.1e-133 477.2 273 85.0
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 1.2e-132 476.9 275 88.0
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 4.5e-132 474.9 298 83.9
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.0e-131 473.8 298 80.9
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 1.0e-131 473.8 274 85.0
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.3e-131 473.4 274 85.4
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.3e-131 473.4 274 85.4
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.3e-131 473.4 273 85.3
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 8.6e-131 470.7 274 85.4
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 8.6e-131 470.7 273 83.5
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.5e-130 469.9 273 85.7
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 3.3e-130 468.8 275 83.3
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 3.3e-130 468.8 294 81.6
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 5.5e-130 468.0 277 84.5
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 7.2e-130 467.6 277 84.5
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 1.2e-129 466.8 275 86.9
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 2.8e-129 465.7 277 84.1
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 6.8e-128 461.1 310 77.1
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 8.9e-128 460.7 273 85.3
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 8.9e-128 460.7 273 85.3
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 2.6e-127 459.1 310 77.7
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.6e-127 459.1 277 81.2
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 9.8e-127 457.2 273 84.2
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 1.3e-126 456.8 284 82.4
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 1.7e-126 456.4 284 83.5
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 4.9e-126 454.9 282 82.3
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 1.8e-125 453.0 313 77.0
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.2e-124 450.3 276 80.1
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 2.0e-124 449.5 296 78.4
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 4.5e-124 448.4 309 74.4
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 5.0e-123 444.9 279 79.2
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.1e-122 443.7 246 89.0
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.1e-122 443.7 278 79.5
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 2.1e-121 439.5 276 79.7
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.0e-120 435.3 275 76.4
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 1.5e-119 433.3 280 81.8
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.4e-119 432.2 266 75.9
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 3.7e-118 428.7 233 92.7
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 2.5e-114 416.0 222 92.8
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.5e-111 406.8 257 86.8
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.6e-108 396.7 264 73.1
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.4e-104 383.6 275 73.5
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 8.9e-104 380.9 275 72.4
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 8.9e-104 380.9 275 72.4
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 5.8e-103 378.3 277 72.2
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.7e-102 376.7 205 91.2
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 4.3e-98 362.1 255 71.8
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.8e-94 349.0 241 69.7
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 4.9e-94 348.6 212 83.0
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 2.1e-92 343.2 282 63.1
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 8.7e-91 337.8 280 61.8
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 3.3e-90 335.9 282 62.1
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.6e-89 332.4 246 68.7
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 6.2e-89 331.6 188 88.3
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 1.5e-87 327.0 267 65.2
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 3.4e-87 325.9 181 90.6
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 7.6e-87 324.7 295 59.0
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 3.2e-85 319.3 190 84.7
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.3e-82 309.3 202 72.3
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 9.9e-79 297.7 181 81.8
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 7.1e-77 291.6 265 57.7
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 5.6e-74 282.0 246 67.1
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 4.5e-71 272.3 147 93.9
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 4.6e-68 262.3 190 70.0
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 7.4e-50 201.8 100 96.0
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 2.2e-49 200.3 116 87.9
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.2e-47 194.5 106 85.8
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 5.0e-46 189.1 96 92.7
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 4.4e-42 176.0 106 80.2
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 5.7e-42 175.6 260 41.2
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 2.4e-40 170.2 97 82.5
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 5.0e-38 162.5 122 72.1
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 5.0e-38 162.5 94 84.0
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 6.1e-36 155.6 78 94.9
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 2.2e-33 147.1 268 33.6
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 4.8e-33 146.0 79 86.1
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.8e-32 144.1 219 42.0
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.6e-31 140.2 258 35.3
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 5.9e-31 139.0 83 81.9
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 1.5e-29 134.4 118 63.6
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 1.5e-29 134.4 118 63.6
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 2.5e-29 133.7 186 44.1
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 2.5e-29 133.7 118 64.4
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 4.2e-29 132.9 105 69.5
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 2.1e-28 130.6 118 61.9
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 2.7e-28 130.2 118 62.7
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 4.7e-28 129.4 66 93.9
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 3.0e-27 126.7 118 61.9
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 6.8e-27 125.6 118 61.0
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 1.5e-26 124.4 247 33.6
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 3.5e-23 113.2 155 41.9
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 7.7e-23 112.1 87 66.7
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 6.5e-22 109.0 155 41.9
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 1.6e-20 104.4 83 66.3
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.2e-17 94.0 47 95.7
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 3.8e-14 83.2 45 86.7
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 9.5e-13 78.6 45 77.8


User provided reference genes

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