Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 3.3e-181 638.3 323 100.0
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 4.9e-161 571.2 323 91.6
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.4e-160 568.9 323 91.6
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 2.1e-159 565.8 328 90.5
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 3.8e-153 545.0 336 84.2
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 2.1e-151 539.3 323 83.3
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 4.3e-149 531.6 312 83.3
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 3.6e-148 528.5 323 81.7
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 4.0e-147 525.0 323 81.4
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 6.9e-147 524.2 323 82.0
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 5.8e-146 521.2 323 80.8
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 9.9e-146 520.4 363 73.8
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 8.4e-145 517.3 323 80.2
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 7.1e-144 514.2 324 80.2
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 9.3e-144 513.8 306 85.0
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 9.3e-144 513.8 323 83.0
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 3.9e-142 508.4 325 80.0
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 5.1e-142 508.1 323 79.3
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 1.5e-141 506.5 323 79.6
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 9.6e-141 503.8 323 78.6
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 1.6e-140 503.1 322 81.1
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.1e-140 502.7 323 78.0
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 6.2e-140 501.1 323 78.9
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 8.2e-140 500.7 323 78.6
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 8.2e-140 500.7 324 79.0
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.4e-139 499.2 324 79.6
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 2.4e-139 499.2 324 79.6
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 5.3e-139 498.0 324 79.6
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 1.2e-138 496.9 321 79.8
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 1.5e-138 496.5 326 77.3
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 2.0e-138 496.1 324 78.4
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 2.6e-138 495.7 323 79.6
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 3.4e-138 495.4 322 78.3
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 5.8e-138 494.6 323 78.0
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.8e-137 491.9 328 75.9
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 4.9e-137 491.5 306 81.0
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 8.4e-137 490.7 324 78.4
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 5.5e-136 488.0 323 77.1
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 7.1e-136 487.6 323 78.3
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 1.2e-135 486.9 320 75.3
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 4.6e-135 485.0 320 75.3
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 1.8e-134 483.0 324 77.5
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.9e-134 481.9 317 76.7
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 5.1e-134 481.5 320 74.7
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 1.3e-132 476.9 327 74.3
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 3.1e-131 472.2 342 72.8
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.7e-129 466.5 320 71.9
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 5.0e-129 464.9 309 74.1
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 8.5e-129 464.2 321 75.1
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 3.2e-128 462.2 322 75.2
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 7.2e-128 461.1 323 74.6
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 1.2e-127 460.3 319 74.3
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.2e-127 460.3 305 74.4
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 1.3e-126 456.8 323 73.1
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.3e-126 456.8 321 74.1
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 1.5e-125 453.4 317 72.6
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 2.5e-125 452.6 324 71.9
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 5.7e-125 451.4 322 73.9
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 2.8e-124 449.1 324 70.4
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 1.2e-122 443.7 323 70.3
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 3.4e-122 442.2 309 72.8
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 1.0e-121 440.7 300 72.0
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 2.9e-121 439.1 323 69.0
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 3.8e-121 438.7 324 69.4
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 6.5e-121 438.0 326 66.0
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 1.9e-120 436.4 290 75.2
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 7.2e-120 434.5 300 75.3
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 1.2e-119 433.7 295 74.2
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 4.6e-119 431.8 308 75.0
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 2.3e-118 429.5 294 74.5
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 3.3e-117 425.6 321 68.5
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 1.7e-116 423.3 320 69.1
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 2.2e-116 422.9 328 65.5
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 2.2e-116 422.9 297 73.1
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 8.2e-116 421.0 326 67.5
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 2.4e-115 419.5 295 71.9
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 6.9e-115 417.9 323 68.1
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 6.9e-115 417.9 290 74.8
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 4.5e-114 415.2 320 67.5
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 7.7e-114 414.5 306 70.3
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 7.7e-114 414.5 288 75.0
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 1.7e-113 413.3 320 67.5
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 7.2e-112 407.9 300 69.7
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 7.2e-112 407.9 306 69.6
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 2.1e-111 406.4 295 71.2
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 7.9e-111 404.4 305 67.5
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 2.3e-110 402.9 323 66.6
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 3.0e-110 402.5 315 65.7
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 1.3e-108 397.1 301 67.1
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 8.2e-108 394.4 316 65.2
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 8.2e-108 394.4 314 65.3
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.5e-104 383.6 324 63.9
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.2e-103 380.6 354 59.6
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 1.2e-103 380.6 327 62.4
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 5.2e-102 375.2 271 71.2
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 1.3e-100 370.5 338 58.0
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 4.8e-100 368.6 377 55.2
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.4e-99 367.1 324 63.3
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 7.0e-99 364.8 245 76.3
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 6.5e-97 358.2 340 56.5
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 8.5e-97 357.8 302 62.3
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 2.5e-96 356.3 294 63.9
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 3.7e-92 342.4 223 78.9
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 4.0e-86 322.4 221 75.6
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 4.5e-82 308.9 198 80.3
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 8.3e-76 288.1 328 48.5
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.4e-75 287.3 226 69.5
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 1.2e-74 284.3 152 89.5
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 4.0e-70 269.2 299 51.2
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 1.2e-66 257.7 327 47.4
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 1.3e-65 254.2 227 62.6
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 6.4e-60 235.3 343 42.0
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 4.6e-58 229.2 203 61.6
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 8.4e-44 181.8 124 74.2
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 1.3e-36 157.9 175 54.9
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 2.1e-34 150.6 136 61.0
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 7.9e-34 148.7 135 60.7
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 1.8e-30 137.5 358 28.5
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 2.4e-30 137.1 80 82.5
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 2.4e-30 137.1 80 82.5
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 1.5e-29 134.4 297 32.7
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 5.6e-24 115.9 339 30.1
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 2.0e-21 107.5 86 66.3
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 2.0e-21 107.5 64 78.1
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 7.1e-19 99.0 82 68.3
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 1.6e-18 97.8 82 67.1
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 1.6e-18 97.8 82 67.1
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 7.9e-18 95.5 79 68.4
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 1.6e-15 87.8 52 75.0
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 1.6e-15 87.8 91 51.6
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 9.0e-14 82.0 47 76.6
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 4.6e-10 69.7 64 57.8
TPR.G25462 Trifolium pratense HOM05D000254 ORTHO05D000165 2.3e-09 67.4 116 36.2
TPR.G25476 Trifolium pratense HOM05D000254 ORTHO05D000165 6.7e-09 65.9 65 58.5
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.1e-08 65.1 46 71.7
TPR.G25443 Trifolium pratense HOM05D000254 ORTHO05D000165 6.3e-07 59.3 59 55.9
Sopen09g008640 Solanum pennellii HOM05D011435 ORTHO05D012656 1.4e-06 58.2 56 51.8


User provided reference genes

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