Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 1.4e-162 576.2 292 100.0
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 1.3e-155 553.1 292 93.8
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.8e-155 552.0 292 93.8
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 2.4e-154 548.9 292 94.5
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 5.3e-154 547.7 292 93.2
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 2.6e-153 545.4 292 93.5
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 7.4e-148 527.3 292 89.0
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.6e-147 526.2 292 89.7
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 1.6e-147 526.2 293 90.4
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.8e-147 525.4 292 90.1
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 2.0e-145 519.2 292 89.0
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 2.2e-144 515.8 292 87.0
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.9e-144 514.6 294 88.1
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 8.4e-144 513.8 290 87.9
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 8.4e-144 513.8 292 87.7
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 1.1e-143 513.5 292 87.0
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 1.4e-143 513.1 292 87.3
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 3.2e-143 511.9 292 87.0
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 7.1e-143 510.8 292 87.0
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 7.1e-143 510.8 294 86.4
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 1.2e-142 510.0 292 86.0
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 2.1e-142 509.2 290 85.5
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 2.7e-142 508.8 290 86.9
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 5.1e-141 504.6 290 84.8
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.1e-140 503.4 292 87.0
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 1.9e-140 502.7 280 87.9
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.9e-140 502.7 290 84.5
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 3.3e-140 501.9 292 83.9
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 4.3e-140 501.5 290 86.6
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 9.6e-140 500.4 323 79.3
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 1.6e-139 499.6 292 83.6
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 4.8e-139 498.0 292 83.6
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 6.2e-139 497.7 292 85.6
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 2.4e-138 495.7 291 84.2
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 6.9e-138 494.2 321 79.4
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.2e-137 493.4 326 76.7
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 1.5e-137 493.0 293 84.3
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 1.7e-136 489.6 291 84.5
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.7e-136 489.6 306 80.4
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 1.7e-136 489.6 294 83.7
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 6.5e-136 487.6 291 83.8
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 8.4e-136 487.3 273 88.6
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.1e-135 486.9 290 82.1
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.4e-135 486.5 292 82.2
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 3.2e-135 485.3 292 82.2
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 4.2e-135 485.0 292 82.5
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 5.5e-135 484.6 292 82.2
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 7.1e-135 484.2 292 82.2
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 9.3e-135 483.8 292 83.6
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 9.3e-135 483.8 290 82.1
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 1.6e-134 483.0 291 82.1
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 1.8e-133 479.6 291 81.8
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 6.7e-133 477.6 297 80.8
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 2.5e-132 475.7 292 80.5
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 9.6e-132 473.8 293 81.2
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 2.8e-131 472.2 292 81.2
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 3.7e-131 471.9 292 79.8
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 4.8e-131 471.5 292 80.5
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.1e-130 470.3 292 80.8
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.4e-130 469.9 292 80.8
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 1.8e-130 469.5 292 81.5
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 3.1e-130 468.8 293 80.9
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 4.1e-130 468.4 292 81.2
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 4.1e-130 468.4 292 80.5
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 3.4e-129 465.3 268 84.3
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.3e-128 463.4 292 78.1
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 2.2e-128 462.6 292 81.5
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 1.4e-127 459.9 325 73.5
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 9.3e-127 457.2 293 78.5
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 9.3e-127 457.2 294 77.9
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 3.6e-126 455.3 292 78.4
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 6.1e-126 454.5 292 79.1
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 3.0e-125 452.2 293 80.2
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 6.7e-125 451.1 292 77.7
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 1.5e-124 449.9 292 78.8
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 3.3e-124 448.7 292 74.7
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 4.3e-124 448.4 297 78.8
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 9.7e-124 447.2 290 76.2
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 1.6e-123 446.4 293 77.1
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 2.2e-123 446.0 291 77.0
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 3.7e-123 445.3 237 92.4
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.8e-123 444.9 290 75.5
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.8e-122 443.0 290 75.9
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 5.3e-122 441.4 292 78.1
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 5.3e-122 441.4 292 78.1
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 7.7e-121 437.6 294 74.1
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 7.7e-121 437.6 385 63.6
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 6.5e-120 434.5 308 71.4
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 1.9e-119 433.0 285 77.2
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.9e-119 433.0 310 71.0
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 1.2e-118 430.3 292 76.7
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 1.2e-118 430.3 292 73.3
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 1.6e-118 429.9 292 76.7
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 1.0e-117 427.2 292 74.0
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 1.0e-117 427.2 292 74.0
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 1.0e-117 427.2 293 74.7
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 3.3e-116 422.2 290 73.4
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 2.2e-115 419.5 290 74.5
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 4.8e-115 418.3 292 72.9
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 1.4e-114 416.8 292 73.3
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 3.1e-114 415.6 292 71.9
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 9.1e-114 414.1 290 74.1
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 5.9e-113 411.4 292 74.7
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.2e-112 409.5 292 74.3
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 2.2e-112 409.5 293 72.7
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 5.0e-112 408.3 291 73.5
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 3.2e-111 405.6 293 71.3
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 2.1e-110 402.9 231 86.1
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.8e-109 399.8 291 71.5
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 1.5e-108 396.7 299 67.9
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.7e-107 393.3 293 67.9
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 2.2e-107 392.9 292 70.2
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 2.2e-107 392.9 293 67.2
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.3e-106 388.3 298 69.1
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 2.9e-104 382.5 292 67.5
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 1.2e-102 377.1 297 65.7
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 3.6e-102 375.6 208 89.9
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 1.4e-101 373.6 292 67.1
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 1.4e-101 373.6 227 78.9
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 3.0e-101 372.5 292 69.2
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 3.5e-97 359.0 293 64.8
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 5.0e-96 355.1 260 72.7
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.9e-95 353.2 237 76.4
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 5.5e-95 351.7 239 75.3
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 5.5e-95 351.7 191 89.0
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.8e-85 320.1 285 57.9
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 3.0e-85 319.3 288 58.7
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 6.3e-83 311.6 184 80.4
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 2.6e-76 289.7 191 72.3
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 1.7e-75 287.0 298 50.3
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.4e-74 283.9 202 71.8
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.2e-73 280.8 297 52.2
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 9.8e-68 261.2 294 51.7
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.2e-67 260.0 290 52.4
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 4.4e-60 235.7 295 50.8
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 4.4e-60 235.7 295 50.8
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 4.4e-60 235.7 295 50.8
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.6e-54 217.2 263 51.0
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 4.6e-49 199.1 105 93.3
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.8e-46 189.9 108 86.1
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 6.9e-45 185.3 151 63.6
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.3e-43 181.0 228 47.8
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.3e-38 164.5 153 60.1
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.6e-38 162.9 153 59.5
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.6e-38 162.9 153 59.5
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 7.6e-36 155.2 91 82.4
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 1.4e-34 151.0 85 85.9
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 3.2e-34 149.8 194 42.8
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 4.2e-34 149.4 107 69.2
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 3.4e-28 129.8 80 80.0
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 3.4e-28 129.8 80 80.0
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 2.2e-27 127.1 71 85.9
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 7.9e-25 118.6 95 69.5
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 2.5e-23 113.6 68 79.4
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 9.6e-23 111.7 188 41.5
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 1.0e-19 101.7 128 47.7
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 4.9e-19 99.4 60 76.7
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 9.7e-15 85.1 59 69.5
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 8.2e-14 82.0 86 53.5
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 5.3e-13 79.3 58 72.4
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 2.0e-12 77.4 231 29.4
GSVIVG01012952001 Vitis vinifera HOM05D004410 ORTHO05D439300 1.3e-06 58.2 44 59.1
GSVIVG01012950001 Vitis vinifera HOM05D004410 ORTHO05D438744 3.7e-06 56.6 44 56.8


User provided reference genes

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