Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G149100 Theobroma cacao HOM05D005914 ORTHO05D007361 7.2e-231 803.5 393 100.0
Gohir.A08G236800 Gossypium hirsutum HOM05D005914 ORTHO05D007361 5.4e-194 681.0 391 84.1
Gorai.004G274400 Gossypium raimondii HOM05D005914 ORTHO05D007361 2.0e-193 679.1 389 84.6
Duzib150G0329 Durio zibethinus HOM05D005914 ORTHO05D007361 1.5e-188 662.9 391 83.6
COL.COLO4_23983 Corchorus olitorius HOM05D005914 ORTHO05D007361 4.1e-178 628.2 391 80.8
Gohir.D08G257400 Gossypium hirsutum HOM05D005914 ORTHO05D007361 7.3e-175 617.5 389 78.9
Haze_21570 Corylus avellana HOM05D005914 ORTHO05D007361 1.6e-174 616.3 391 76.2
Cfa013180 Carpinus fangiana HOM05D005914 ORTHO05D007361 2.3e-173 612.5 391 75.7
QL02p022744 Quercus lobata HOM05D005914 ORTHO05D007361 6.8e-173 610.9 382 76.7
Ciclev10008576m.g Citrus clementina HOM05D005914 ORTHO05D007361 7.5e-172 607.4 390 76.4
TWI63G0300 Tripterygium wilfordii HOM05D005914 ORTHO05D007361 2.4e-170 602.4 382 75.1
Atru.chr7.2376 Acer truncatum HOM05D005914 ORTHO05D007361 5.0e-168 594.7 389 74.3
CiPaw.07G220900 Carya illinoinensis HOM05D005914 ORTHO05D007361 1.6e-166 589.7 391 71.9
TAR625G1283 Trochodendron aralioides HOM05D005914 ORTHO05D007361 8.9e-165 583.9 391 71.1
RcHm_v2.0_Chr6g0298621 Rosa chinensis HOM05D005914 ORTHO05D007361 9.8e-164 580.5 386 75.6
THA.LOC104799221 Tarenaya hassleriana HOM05D005914 ORTHO05D007361 2.2e-163 579.3 391 72.9
Sabra06G0196100 Salix brachista HOM05D005914 ORTHO05D007361 8.3e-163 577.4 381 75.1
CSS0046358 Camellia sinensis var. sinensis HOM05D005914 ORTHO05D007361 1.1e-162 577.0 382 72.8
Potri.006G250800 Populus trichocarpa HOM05D005914 ORTHO05D007361 1.4e-162 576.6 381 74.8
Actinidia22373 Actinidia chinensis HOM05D005914 ORTHO05D007361 4.1e-162 575.1 391 71.1
GSVIVG01035808001 Vitis vinifera HOM05D005914 ORTHO05D007361 9.2e-162 573.9 392 72.2
CANSAT80G2406 Cannabis sativa HOM05D005914 ORTHO05D007361 6.0e-161 571.2 381 74.3
Rhsim02G0194500 Rhododendron simsii HOM05D005914 ORTHO05D007361 6.0e-161 571.2 391 71.9
CANSAT80G0109 Cannabis sativa HOM05D005914 ORTHO05D007361 1.7e-160 569.7 381 74.0
FvH4_2g29650 Fragaria vesca HOM05D005914 ORTHO05D007361 3.9e-160 568.5 384 74.7
MD15G1120500 Malus domestica HOM05D005914 ORTHO05D007361 6.6e-160 567.8 382 73.3
FAN24G3193 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.9e-159 566.2 384 74.5
Aa31LG11G4850 Aethionema arabicum HOM05D005914 ORTHO05D007361 1.5e-156 556.6 389 71.7
Thhalv10004397m.g Eutrema salsugineum HOM05D005914 ORTHO05D007361 9.9e-156 553.9 380 73.7
C07p42340 Brassica napus HOM05D005914 ORTHO05D007361 8.4e-155 550.8 389 72.5
AT5G25480 Arabidopsis thaliana HOM05D005914 ORTHO05D007361 2.4e-154 549.3 381 72.7
Carub.0006s2334 Capsella rubella HOM05D005914 ORTHO05D007361 5.4e-154 548.1 379 71.8
PGR142G2371 Punica granatum HOM05D005914 ORTHO05D007361 1.6e-153 546.6 383 70.8
Aqoxy7G02060 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 2.1e-153 546.2 390 68.2
Eucgr.C01789 Eucalyptus grandis HOM05D005914 ORTHO05D007361 2.7e-153 545.8 397 67.8
Sp2g22050 Schrenkiella parvula HOM05D005914 ORTHO05D007361 4.6e-153 545.0 379 71.2
AL6G37280 Arabidopsis lyrata HOM05D005914 ORTHO05D007361 1.3e-152 543.5 380 72.4
MELO3C011235.2 Cucumis melo HOM05D005914 ORTHO05D007361 2.3e-152 542.7 382 69.4
EL10Ac2g02591 Beta vulgaris HOM05D005914 ORTHO05D007361 1.1e-151 540.4 380 68.7
PSO170G3156 Papaver somniferum HOM05D005914 ORTHO05D007361 1.1e-151 540.4 393 67.7
ClCG08G013130 Citrullus lanatus HOM05D005914 ORTHO05D007361 1.5e-151 540.0 381 70.6
Glyma.15G054900 Glycine max HOM05D005914 ORTHO05D007361 1.6e-150 536.6 379 71.5
arahy.Tifrunner.gnm1.ann1.J9LH1L Arachis hypogaea HOM05D005914 ORTHO05D007361 6.2e-150 534.6 393 68.2
A06p36180 Brassica napus HOM05D005914 ORTHO05D007361 1.1e-149 533.9 385 70.9
Lj6g0019162 Lotus japonicus HOM05D005914 ORTHO05D007361 1.8e-149 533.1 381 71.7
BraA06t26540Z Brassica rapa HOM05D005914 ORTHO05D007361 6.9e-149 531.2 380 71.3
arahy.Tifrunner.gnm1.ann1.T9E77A Arachis hypogaea HOM05D005914 ORTHO05D007361 2.2e-147 526.2 393 67.4
HanXRQChr13g0402741 Helianthus annuus HOM05D005914 ORTHO05D007361 2.2e-147 526.2 382 67.8
Lalb_Chr20g0122961 Lupinus albus HOM05D005914 ORTHO05D007361 1.4e-146 523.5 378 69.6
Psat1g215880 Pisum sativum HOM05D005914 ORTHO05D007361 4.2e-146 521.9 381 69.8
CAN.G98.27 Capsicum annuum HOM05D005914 ORTHO05D007361 7.1e-146 521.2 384 67.4
VMungo0540G0716 Vigna mungo HOM05D005914 ORTHO05D007361 7.1e-146 521.2 387 67.4
Ca_00145_v3 Cicer arietinum L. HOM05D005914 ORTHO05D007361 2.7e-145 519.2 379 69.7
Migut.E01476 Erythranthe guttata HOM05D005914 ORTHO05D007361 3.5e-145 518.8 377 68.2
Medtr2g009140 Medicago truncatula HOM05D005914 ORTHO05D007361 1.3e-144 516.9 381 69.0
Cc11_g01820 Coffea canephora HOM05D005914 ORTHO05D007361 3.3e-143 512.3 382 67.3
Solyc08g067070.3 Solanum lycopersicum HOM05D005914 ORTHO05D007361 3.3e-143 512.3 384 67.4
Sopen08g021020 Solanum pennellii HOM05D005914 ORTHO05D007361 7.3e-143 511.1 384 67.4
SGA_v2.0_scaffold4G02186 Striga asiatica HOM05D005914 ORTHO05D007361 1.6e-142 510.0 378 67.2
Nn2g11936 Nelumbo nucifera HOM05D005914 ORTHO05D007361 6.2e-142 508.1 366 68.6
Lsat_1_v5_gn_6_22181 Lactuca sativa HOM05D005914 ORTHO05D007361 5.8e-140 501.5 370 66.5
DCAR_006234 Daucus carota HOM05D005914 ORTHO05D007361 7.6e-140 501.1 415 62.9
Sed0010731 Sechium edule HOM05D005914 ORTHO05D007361 3.2e-138 495.7 358 69.0
Nitab4.5_0000151g0200 Nicotiana tabacum HOM05D005914 ORTHO05D007361 3.5e-137 492.3 388 64.9
Nitab4.5_0001669g0040 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.3e-136 490.3 384 64.8
CDE04G0852 Ceratophyllum demersum HOM05D005914 ORTHO05D007361 5.1e-136 488.4 398 61.6
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 6.7e-136 488.0 371 65.5
arahy.Tifrunner.gnm1.ann1.71PCZ9 Arachis hypogaea HOM05D005914 ORTHO05D007361 3.1e-133 479.2 360 67.2
BolC7t44763H Brassica oleracea HOM05D005914 ORTHO05D007361 2.4e-130 469.5 350 69.7
HPP92_012620 Vanilla planifolia HOM05D005914 ORTHO05D007361 4.2e-130 468.8 389 61.7
Zm00001eb358040 Zea mays HOM05D005914 ORTHO05D007361 8.7e-128 461.1 386 61.4
SalBow2G3472 Salvia bowleyana HOM05D005914 ORTHO05D007361 4.3e-127 458.8 384 62.5
Prupe.1G473200 Prunus persica HOM05D005914 ORTHO05D007361 1.1e-125 454.1 317 71.6
Peaxi162Scf00341g00624 Petunia axillaris HOM05D005914 ORTHO05D007361 2.4e-125 453.0 345 65.2
Manes.16G119400 Manihot esculenta HOM05D005914 ORTHO05D007361 9.0e-125 451.1 319 71.2
unitig_747.g21653 Utricularia gibba HOM05D005914 ORTHO05D007361 1.5e-124 450.3 388 57.7
Dinv11618 Davidia involucrata HOM05D005914 ORTHO05D007361 2.0e-124 449.9 294 73.5
AUR62024878 Chenopodium quinoa HOM05D005914 ORTHO05D007361 2.6e-124 449.5 364 63.5
TPR.G25250 Trifolium pratense HOM05D005914 ORTHO05D008190 3.6e-113 412.5 314 67.5
CsaV3_2G031850 Cucumis sativus L. HOM05D005914 ORTHO05D007361 8.5e-107 391.3 387 53.2
Mapoly0011s0185 Marchantia polymorpha HOM05D005914 ORTHO05D007361 1.0e-104 384.4 450 48.0
PSO455G0041 Papaver somniferum HOM05D005914 ORTHO05D007361 5.7e-103 378.6 299 63.5
Phvul.006G205000 Phaseolus vulgaris HOM05D005914 ORTHO05D007361 2.2e-102 376.7 296 65.9
AUR62030669 Chenopodium quinoa HOM05D005914 ORTHO05D007361 6.9e-101 371.7 313 59.4
SMO146G0196 Selaginella moellendorffii HOM05D005914 ORTHO05D007361 2.2e-99 366.7 383 50.9
FAN27G2538 Fragaria x ananassa HOM05D005914 ORTHO05D007361 4.2e-98 362.5 375 56.8
Pp3c12_2410 Physcomitrium patens HOM05D005914 ORTHO05D007361 3.6e-97 359.4 464 45.0
ATR0815G040 Amborella trichopoda HOM05D005914 ORTHO05D007361 9.7e-95 351.3 350 54.6
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 9.7e-87 324.7 375 52.0
CBR_g3173 Chara braunii HOM05D005914 ORTHO05D007361 2.1e-81 307.0 539 37.8
MD08G1143700 Malus domestica HOM05D005914 ORTHO05D007361 1.8e-80 303.9 288 57.3
Os01g0612000 Oryza sativa ssp. japonica HOM05D005914 ORTHO05D007361 1.1e-77 294.7 284 54.6
MSTRG.13986 Avicennia marina HOM05D005914 ORTHO05D007361 3.5e-76 289.7 246 61.0
CARHR187910 Cardamine hirsuta HOM05D005914 ORTHO05D007361 7.2e-74 282.0 179 74.9
Cpa.g.sc91.41 Carica papaya HOM05D005914 ORTHO05D007361 2.1e-73 280.4 172 79.7
Lj7C718G14 Lonicera japonica HOM05D005914 ORTHO05D007361 2.8e-73 280.0 270 54.1
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.8e-72 277.3 267 57.3
PRCOL_00003212 Prasinoderma coloniale HOM05D005914 ORTHO05D007361 6.6e-67 258.8 425 36.7
MBI04_g46184_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 1.5e-66 257.7 350 46.3
MCO14G456 Micromonas commoda HOM05D005914 ORTHO05D007361 3.3e-66 256.5 390 39.5
AagrBONN_evm.TU.Sc2ySwM_228.810 Anthoceros agrestis HOM05D005914 ORTHO05D007361 4.3e-66 256.1 305 48.9
Hma1.2p1_0000F.1_g000780 Hydrangea macrophylla HOM05D005914 ORTHO05D007361 1.2e-65 254.6 224 60.7
Ah.12g063960 Amaranthus hybridus HOM05D005914 ORTHO05D007361 3.4e-63 246.5 153 77.1
RcHm_v2.0_Chr1g0355831 Rosa chinensis HOM05D005914 ORTHO05D007361 5.0e-59 232.6 258 53.1
MD15G1439700 Malus domestica HOM05D005914 ORTHO05D007361 5.6e-58 229.2 408 40.0
Glyma.08G177800 Glycine max HOM05D005914 ORTHO05D007361 1.2e-47 194.9 199 51.8
SEGI_35502 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 1.1e-40 171.8 111 73.9
MCO11G560 Micromonas commoda HOM05D005914 ORTHO05D007361 4.4e-39 166.4 402 31.3
Nitab4.5_0003498g0080 Nicotiana tabacum HOM05D005914 ORTHO05D007361 1.2e-36 158.3 320 38.1
CAN.G374.12 Capsicum annuum HOM05D005914 ORTHO05D007361 5.1e-35 152.9 312 34.9
PGR031G2948 Punica granatum HOM05D005914 ORTHO05D007361 2.5e-34 150.6 85 81.2
Cre12.g484600 Chlamydomonas reinhardtii HOM05D005914 ORTHO05D007361 9.9e-31 138.7 175 43.4
Sc09g0008460 Simmondsia chinensis HOM05D005914 ORTHO05D007361 5.4e-29 132.9 141 48.2
Sc09g0008450 Simmondsia chinensis HOM05D005914 ORTHO05D007361 6.0e-28 129.4 80 77.5
Sc09g0008440 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.5e-26 124.0 80 70.0
Oeu033137.1 Olea europaea HOM05D005914 ORTHO05D007361 5.6e-26 122.9 84 70.2
Sc09g0008580 Simmondsia chinensis HOM05D005914 ORTHO05D007361 2.8e-25 120.6 80 71.2
TPR.G22731 Trifolium pratense HOM05D005914 ORTHO05D007361 1.4e-24 118.2 69 82.6
Aqoxy7G02061 Aquilegia oxysepala HOM05D005914 ORTHO05D007361 1.8e-19 101.3 61 73.8
Ah.12g063950 Amaranthus hybridus HOM05D005914 ORTHO05D007361 5.1e-19 99.8 120 43.3
SEGI_14251 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 2.1e-17 94.4 73 65.8
MBI04_g10409_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 5.3e-16 89.7 56 69.6
MBI04_g46185_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 5.3e-16 89.7 56 69.6
Sc09g0008540 Simmondsia chinensis HOM05D002899 ORTHO05D003850 7.6e-15 85.9 52 75.0
SEGI_16557 Sequoiadendron giganteum HOM05D005914 ORTHO05D007361 8.4e-14 82.4 52 69.2
MD08G1143600 Malus domestica HOM05D005914 ORTHO05D007361 1.1e-10 72.0 67 55.2
Sc09g0008600 Simmondsia chinensis HOM05D005914 ORTHO05D007361 5.6e-10 69.7 45 68.9
MD08G1144900 Malus domestica HOM05D005914 ORTHO05D007361 4.8e-09 66.6 84 41.7
Ah.12g063940 Amaranthus hybridus HOM05D005914 ORTHO05D007361 3.1e-08 63.9 41 68.3
Lj7A718T66 Lonicera japonica HOM05D005914 ORTHO05D007361 6.9e-08 62.8 73 47.9
Glyma.08G177700 Glycine max HOM05D005914 ORTHO05D007361 3.4e-07 60.5 28 92.9
MD08G1143500 Malus domestica HOM05D005914 ORTHO05D007361 4.9e-06 56.6 73 45.2


User provided reference genes

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