Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G140500 Theobroma cacao HOM05D000344 ORTHO05D000934 2.4e-63 245.4 125 100.0
COL.COLO4_17426 Corchorus olitorius HOM05D000344 ORTHO05D000934 2.9e-45 185.3 121 78.5
Gorai.002G039300 Gossypium raimondii HOM05D000344 ORTHO05D000934 1.4e-42 176.4 123 75.6
Gohir.D01G030100 Gossypium hirsutum HOM05D000344 ORTHO05D000934 8.8e-42 173.7 122 76.2
Gorai.007G335200 Gossypium raimondii HOM05D000344 ORTHO05D000934 4.4e-33 144.8 121 66.9
Gohir.D11G301500 Gossypium hirsutum HOM05D000344 ORTHO05D000934 1.7e-32 142.9 121 66.1
Gohir.A11G291100 Gossypium hirsutum HOM05D000344 ORTHO05D000934 1.1e-31 140.2 120 65.0
Dinv13320 Davidia involucrata HOM05D000344 ORTHO05D000934 3.1e-31 138.7 122 59.8
MD05G1206800 Malus domestica HOM05D000344 ORTHO05D000934 3.5e-30 135.2 122 56.6
Duzib213G1061 Durio zibethinus HOM05D000344 ORTHO05D000934 1.3e-29 133.3 122 60.7
TAR627G0581 Trochodendron aralioides HOM05D000344 ORTHO05D000934 8.6e-29 130.6 120 59.2
Cpa.g.sc77.86 Carica papaya HOM05D000344 ORTHO05D000934 3.3e-28 128.6 121 57.9
Ciclev10018666m.g Citrus clementina HOM05D000344 ORTHO05D000934 9.5e-28 127.1 116 62.1
Duzib268G1504 Durio zibethinus HOM05D000344 ORTHO05D000934 1.2e-27 126.7 122 56.6
Rhsim06G0185400 Rhododendron simsii HOM05D000344 ORTHO05D000934 6.8e-26 120.9 111 61.3
MD10G1193900 Malus domestica HOM05D000344 ORTHO05D000934 8.9e-26 120.6 122 52.5
PGR031G3787 Punica granatum HOM05D000344 ORTHO05D000934 1.5e-25 119.8 117 59.8
Cfa019460 Carpinus fangiana HOM05D000344 ORTHO05D000934 2.6e-25 119.0 107 60.7
Prupe.4G150400 Prunus persica HOM05D000344 ORTHO05D000934 3.4e-25 118.6 122 52.5
Haze_08487 Corylus avellana HOM05D000344 ORTHO05D000934 4.4e-25 118.2 107 59.8
Nitab4.5_0006614g0020 Nicotiana tabacum HOM05D000344 ORTHO05D000934 1.7e-24 116.3 120 55.8
Cc05_g10380 Coffea canephora HOM05D000344 ORTHO05D000934 1.9e-23 112.8 116 56.0
PGSC0003DMG400027641 Solanum tuberosum HOM05D000344 ORTHO05D000934 1.9e-23 112.8 121 53.7
GSVIVG01000696001 Vitis vinifera HOM05D000344 ORTHO05D000934 1.9e-23 112.8 91 65.9
Potri.001G378900 Populus trichocarpa HOM05D000344 ORTHO05D000934 4.1e-23 111.7 120 57.5
Sabra11G0089000 Salix brachista HOM05D000344 ORTHO05D000934 5.4e-23 111.3 112 58.0
Nn4g26578 Nelumbo nucifera HOM05D000344 ORTHO05D000934 4.6e-22 108.2 122 51.6
Actinidia04587 Actinidia chinensis HOM05D000344 ORTHO05D000934 1.7e-21 106.3 95 63.2
Nitab4.5_0001140g0260 Nicotiana tabacum HOM05D000344 ORTHO05D000934 1.7e-21 106.3 120 52.5
Peaxi162Scf00111g00921 Petunia axillaris HOM05D000344 ORTHO05D000934 1.7e-21 106.3 116 51.7
Eucgr.F03211 Eucalyptus grandis HOM05D000344 ORTHO05D000934 2.3e-21 105.9 116 55.2
Lj3g0013695 Lotus japonicus HOM05D000344 ORTHO05D000934 5.0e-21 104.8 118 55.9
VMungo1080G0073 Vigna mungo HOM05D000344 ORTHO05D000934 1.5e-20 103.2 118 53.4
Actinidia12844 Actinidia chinensis HOM05D000344 ORTHO05D000934 2.5e-20 102.4 107 57.0
vmacro12009 Vaccinium macrocarpon HOM05D000344 ORTHO05D000934 2.5e-20 102.4 111 54.1
arahy.Tifrunner.gnm1.ann1.0B7JEM Arachis hypogaea HOM05D000344 ORTHO05D000934 2.1e-19 99.4 117 54.7
arahy.Tifrunner.gnm1.ann1.J12N8U Arachis hypogaea HOM05D000344 ORTHO05D000934 2.1e-19 99.4 117 54.7
THA.LOC104813982 Tarenaya hassleriana HOM05D000344 ORTHO05D000934 2.1e-19 99.4 89 58.4
DCAR_019622 Daucus carota HOM05D000344 ORTHO05D000934 2.8e-19 99.0 116 50.0
CSS0004308 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D000934 3.6e-19 98.6 95 58.9
CSS0039814 Camellia sinensis var. sinensis HOM05D000344 ORTHO05D000934 3.6e-19 98.6 95 58.9
Glyma.15G248200 Glycine max HOM05D000344 ORTHO05D000934 3.6e-19 98.6 118 52.5
Hund02316 Selenicereus undatus HOM05D000344 ORTHO05D000934 3.6e-19 98.6 101 54.5
Lalb_Chr25g0285431 Lupinus albus HOM05D000344 ORTHO05D000934 1.8e-18 96.3 109 56.9
Sopen07g030100 Solanum pennellii HOM05D000344 ORTHO05D000934 1.8e-18 96.3 109 51.4
Sc16g0007900 Simmondsia chinensis HOM05D000344 ORTHO05D000934 5.2e-18 94.7 116 48.3
EL10Ac4g08494 Beta vulgaris HOM05D000344 ORTHO05D000934 6.8e-18 94.4 114 50.0
Gorai.002G039600 Gossypium raimondii HOM05D000344 ORTHO05D000934 6.8e-18 94.4 64 75.0
CAN.G375.91 Capsicum annuum HOM05D000344 ORTHO05D000934 1.5e-17 93.2 121 48.8
Ca_03395_v3 Cicer arietinum L. HOM05D000344 ORTHO05D000934 1.5e-17 93.2 117 49.6
DCAR_013790 Daucus carota HOM05D000344 ORTHO05D000934 2.6e-17 92.4 106 50.9
Solyc07g061780.4 Solanum lycopersicum HOM05D000344 ORTHO05D000934 9.8e-17 90.5 121 46.3
Phvul.005G061400 Phaseolus vulgaris HOM05D000344 ORTHO05D000934 2.2e-16 89.4 118 48.3
Hma1.2p1_0280F.1_g112960 Hydrangea macrophylla HOM05D000344 ORTHO05D000934 2.9e-16 89.0 118 45.8
THA.LOC104813300 Tarenaya hassleriana HOM05D000344 ORTHO05D000934 2.9e-16 89.0 83 59.0
Aa31LG7G1910 Aethionema arabicum HOM05D000344 ORTHO05D000934 1.1e-15 87.0 75 61.3
QL04p070131 Quercus lobata HOM05D000344 ORTHO05D000934 1.4e-15 86.7 117 44.4
AUR62037966 Chenopodium quinoa HOM05D000344 ORTHO05D000934 3.2e-15 85.5 105 47.6
AUR62043084 Chenopodium quinoa HOM05D000344 ORTHO05D000934 3.2e-15 85.5 105 47.6
Lalb_Chr01g0016091 Lupinus albus HOM05D000344 ORTHO05D000934 3.2e-15 85.5 113 48.7
Ah.04g163820 Amaranthus hybridus HOM05D000344 ORTHO05D000934 4.1e-15 85.1 116 45.7
HPP92_023221 Vanilla planifolia HOM05D000344 ORTHO05D000934 4.1e-15 85.1 103 46.6
ECA234G2148 Erigeron canadensis HOM05D000344 ORTHO05D000934 5.4e-15 84.7 108 49.1
HanXRQChr12g0373551 Helianthus annuus HOM05D000344 ORTHO05D000934 7.0e-15 84.3 96 52.1
Glyma.13G259700 Glycine max HOM05D000344 ORTHO05D000934 1.6e-14 83.2 118 45.8
Oeu050695.1 Olea europaea HOM05D000344 ORTHO05D000934 2.1e-14 82.8 82 58.5
Carub.0001s1684 Capsella rubella HOM05D000344 ORTHO05D000934 1.0e-13 80.5 83 53.0
Lj8C142T7 Lonicera japonica HOM05D000344 ORTHO05D000934 1.3e-13 80.1 90 56.7
Nn3g20761 Nelumbo nucifera HOM05D000344 ORTHO05D000934 1.7e-13 79.7 117 42.7
CARHR017650 Cardamine hirsuta HOM05D000344 ORTHO05D000934 2.3e-13 79.3 80 55.0
Potri.011G095200 Populus trichocarpa HOM05D000344 ORTHO05D000934 3.9e-13 78.6 89 58.4
CANSAT56G0229 Cannabis sativa HOM05D000344 ORTHO05D000934 2.5e-12 75.9 124 39.5
MBI07_g26348_MAGBIO Magnolia biondii HOM05D000344 ORTHO05D000934 2.5e-12 75.9 106 40.6
Manes.15G100900 Manihot esculenta HOM05D000344 ORTHO05D000934 2.1e-11 72.8 122 44.3
TPR.G26645 Trifolium pratense HOM05D000344 ORTHO05D000934 4.7e-11 71.6 116 41.4
Dinv26671 Davidia involucrata HOM05D000344 ORTHO05D000934 7.5e-09 64.3 123 43.1
BcaC05g25668 Brassica carinata HOM05D000344 ORTHO05D000934 9.9e-09 63.9 71 52.1
PSO541G2670 Papaver somniferum HOM05D000344 ORTHO05D000934 1.3e-08 63.5 112 32.1
PSO675G7780 Papaver somniferum HOM05D000344 ORTHO05D000934 1.3e-08 63.5 112 32.1
Lsat_1_v5_gn_9_101220 Lactuca sativa HOM05D000344 ORTHO05D000934 2.2e-08 62.8 73 50.7
MBI10_g30414_MAGBIO Magnolia biondii HOM05D000344 ORTHO05D000934 1.1e-07 60.5 109 35.8
FAN11G1238 Fragaria x ananassa HOM05D000344 ORTHO05D000934 4.1e-07 58.5 107 40.2
FAN16G2595 Fragaria x ananassa HOM05D000344 ORTHO05D000934 7.1e-07 57.8 109 40.4
ATR1091G070 Amborella trichopoda HOM05D000344 ORTHO05D000934 1.2e-06 57.0 88 45.5
FAN25G0217 Fragaria x ananassa HOM05D000344 ORTHO05D000934 1.2e-06 57.0 109 39.4
HanXRQChr13g0389811 Helianthus annuus HOM05D000344 ORTHO05D000934 1.2e-06 57.0 72 51.4
Os02g0244300 Oryza sativa ssp. japonica HOM05D000344 ORTHO05D000934 2.1e-06 56.2 122 34.4
Psat1g009520 Pisum sativum HOM05D000344 ORTHO05D000934 6.0e-06 54.7 42 59.5
Sp1g15230 Schrenkiella parvula HOM05D000344 ORTHO05D000934 6.0e-06 54.7 83 41.0


User provided reference genes

Program Settings