Gene: Carub.0001s1684

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0001s1684
  • Transcript Identifier Carub.0001s1684.1
  • Gene Type Coding gene
  • Location scaffold_1 : 5899641-5903685 : negative

Gene Family Information

  • ID HOM05D000344
  • #Genes/#Species 1371/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0001s1684.v1.1
  • pacid 39231313
  • synonym Carubv10011568m.g

Descriptions

  • Description PTHR24006:SF503 - TRAF-LIKE FAMILY PROTEIN-RELATED
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016579
IEA
InterProprotein deubiquitination
GO:0048364
ISO
PLAZA Integrative Orthologyroot development AT1G17110
GO:0051301
ISO
PLAZA Integrative Orthologycell division AT1G17110
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development AT1G17110
GO:0009908
ISO
PLAZA Integrative Orthologyflower development AT1G17110
GO:0048367
ISO
PLAZA Integrative Orthologyshoot system development AT1G17110
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT1G17110

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004843
IEA
InterProthiol-dependent deubiquitinase
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G17110

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G17110
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G17110

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038765 Papain-like cysteine peptidase superfamily
IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase
IPR002893 Zinc finger, MYND-type
Mapman id Description
19.2.3.1.1.6 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein deconjugation.ubiquitin deconjugation.UBP deubiquitinase activities.deubiquitinase (UBP15-21)