Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 0.0e+00 1426.0 715 100.0
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 0.0e+00 1276.5 716 89.2
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1245.3 716 87.8
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 0.0e+00 1243.0 716 87.7
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 0.0e+00 1241.5 716 87.7
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 0.0e+00 1208.0 716 85.9
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 0.0e+00 1140.6 717 78.7
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 0.0e+00 1124.0 723 78.0
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 0.0e+00 1123.6 712 77.4
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1121.3 717 77.8
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 0.0e+00 1120.9 717 77.8
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 0.0e+00 1119.4 714 76.8
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 0.0e+00 1112.1 725 75.6
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 0.0e+00 1110.1 725 75.7
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 0.0e+00 1105.1 716 76.1
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 0.0e+00 1104.7 722 76.2
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 0.0e+00 1103.6 716 76.0
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 0.0e+00 1100.1 719 75.7
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 0.0e+00 1100.1 716 75.6
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 0.0e+00 1087.8 711 75.7
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 0.0e+00 1083.6 722 75.1
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 0.0e+00 1083.2 722 75.6
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 0.0e+00 1080.9 719 74.5
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 4.9e-312 1073.5 727 73.5
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 2.0e-308 1062.0 718 73.0
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 4.5e-308 1060.8 709 74.5
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 7.7e-308 1060.1 709 73.9
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 2.9e-307 1058.1 709 73.9
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 2.1e-305 1052.0 712 73.2
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 5.2e-304 1047.3 720 73.2
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 2.0e-303 1045.4 707 73.7
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 1.3e-302 1042.7 724 72.9
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 7.0e-301 1036.9 720 72.6
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 2.7e-297 1025.0 723 70.5
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 3.6e-297 1024.6 723 69.4
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.0e-296 1023.1 723 69.6
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 1.4e-296 1022.7 720 70.1
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 1.4e-296 1022.7 720 70.0
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 5.7e-295 1017.3 716 70.3
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 6.3e-294 1013.8 724 70.7
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 6.3e-294 1013.8 716 70.3
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 7.0e-293 1010.4 715 68.3
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 9.2e-293 1010.0 716 68.7
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 1.6e-292 1009.2 730 71.4
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 3.5e-292 1008.1 719 69.0
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 5.9e-292 1007.3 700 70.6
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 7.7e-292 1006.9 723 69.4
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 1.7e-291 1005.7 634 77.8
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 1.7e-291 1005.7 718 69.6
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 3.8e-291 1004.6 722 69.3
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 8.6e-291 1003.4 715 68.0
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 1.9e-290 1002.3 722 70.2
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 3.3e-290 1001.5 720 67.5
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 9.5e-290 1000.0 715 68.0
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 3.6e-289 998.0 716 69.1
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.4e-288 996.1 719 69.3
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 2.3e-288 995.3 658 75.2
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 8.3e-286 986.9 718 68.1
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 8.3e-286 986.9 705 70.5
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 7.0e-285 983.8 720 68.1
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 1.6e-284 982.6 721 66.7
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 1.6e-284 982.6 720 66.4
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 2.7e-284 981.9 716 66.6
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 3.5e-284 981.5 721 66.7
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 5.9e-284 980.7 722 67.3
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 1.0e-283 979.9 719 69.0
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 1.1e-282 976.5 733 65.3
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 1.9e-282 975.7 721 68.1
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 4.3e-282 974.5 721 66.3
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 1.2e-281 973.0 721 68.0
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 3.6e-281 971.5 736 66.0
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 2.3e-280 968.8 721 65.9
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 1.9e-277 959.1 708 68.6
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 5.4e-277 957.6 652 71.8
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 5.0e-275 951.0 729 66.0
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 9.5e-274 946.8 654 71.7
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 3.6e-273 944.9 984 54.3
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 9.8e-271 936.8 725 65.5
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.9e-270 934.5 716 67.6
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 5.4e-269 931.0 701 67.2
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.2e-268 929.9 727 64.2
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 6.0e-268 927.5 654 70.5
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 3.9e-267 924.9 629 72.3
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 9.5e-266 920.2 625 72.2
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.9e-262 908.7 723 63.5
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 6.4e-262 907.5 733 62.1
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 7.8e-260 900.6 723 62.2
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.1e-258 896.7 589 72.7
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 3.3e-258 895.2 542 80.4
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 4.4e-255 884.8 583 74.8
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 2.4e-253 879.0 729 60.9
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 9.6e-250 867.1 564 75.0
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 2.6e-247 859.0 871 52.8
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 1.2e-239 833.6 702 61.7
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 3.0e-235 818.9 978 50.6
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 7.9e-220 767.7 721 57.4
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 5.0e-198 695.3 453 75.3
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 1.6e-180 637.1 483 65.6
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 3.1e-176 622.9 726 45.7
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 2.0e-159 567.0 702 43.2
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 2.3e-158 563.5 361 76.2
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 2.9e-153 546.6 635 45.7
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.2e-146 524.6 446 59.6
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 2.4e-136 490.3 380 64.2
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 4.2e-112 409.8 279 71.0
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 2.4e-99 367.5 226 80.5
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 5.3e-99 366.3 254 70.9
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 1.3e-89 335.1 263 63.1
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 1.8e-86 324.7 291 58.4
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 1.4e-70 271.9 167 82.0
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 8.3e-68 262.7 293 49.8
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 8.3e-60 236.1 150 74.0
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 8.9e-46 189.5 259 41.3
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 2.7e-42 177.9 154 61.7
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.7e-41 175.3 259 39.4
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 7.3e-40 169.9 208 44.2
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.1e-35 156.0 129 65.9
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 1.4e-30 139.0 117 65.0
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.4e-30 139.0 112 59.8
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 6.8e-30 136.7 154 45.5
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 8.9e-30 136.3 83 81.9
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 2.0e-29 135.2 107 68.2
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-28 132.5 83 80.7
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-28 131.3 169 42.0
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 4.6e-26 124.0 98 61.2
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 2.1e-23 115.2 72 83.3
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 1.8e-22 112.1 75 65.3
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 3.4e-21 107.8 109 51.4
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 1.3e-20 105.9 103 59.2
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 1.7e-20 105.5 79 65.8
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 3.2e-19 101.3 69 65.2
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 4.2e-19 100.9 61 73.8
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 3.5e-18 97.8 109 48.6
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 1.0e-17 96.3 109 47.7
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 3.9e-17 94.4 75 69.3
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 7.3e-16 90.1 52 78.8
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 8.1e-15 86.7 65 64.6
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 1.8e-14 85.5 77 54.5
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 3.1e-14 84.7 70 65.7
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 6.9e-14 83.6 57 70.2
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 9.0e-14 83.2 169 32.0
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 4.5e-13 80.9 624 21.5
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 5.8e-13 80.5 129 41.1
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 1.3e-12 79.3 70 55.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 2.9e-12 78.2 57 64.9
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 2.9e-12 78.2 57 64.9
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 2.9e-12 78.2 55 61.8
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 2.4e-11 75.1 57 63.2
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 9.3e-11 73.2 48 70.8
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-10 72.8 93 38.7
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 2.7e-10 71.6 53 64.2
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 6.7e-09 67.0 72 56.9
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 6.7e-09 67.0 336 20.2
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 4.3e-08 64.3 56 58.9
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 3.1e-06 58.2 48 60.4
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 4.0e-06 57.8 37 67.6


User provided reference genes

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