Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 1.8e-271 938.7 509 100.0
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 5.5e-167 591.7 487 71.7
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.5e-159 566.2 462 68.0
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.6e-158 563.5 458 68.1
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 4.7e-158 562.0 458 67.9
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 4.4e-156 555.4 505 66.5
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 8.3e-131 471.5 494 58.3
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.9e-127 460.3 463 58.5
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.2e-126 457.6 463 59.8
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 2.1e-110 403.7 474 55.9
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 9.3e-98 361.7 467 52.2
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 1.4e-93 347.8 478 49.4
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 5.5e-90 335.9 526 46.8
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 1.6e-89 334.3 465 50.5
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 1.0e-83 315.1 425 50.8
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.1e-82 311.6 481 45.9
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 1.4e-82 311.2 474 48.1
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 4.6e-81 306.2 482 43.4
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 1.0e-80 305.1 462 49.8
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 6.7e-80 302.4 499 47.3
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 8.8e-80 302.0 375 49.3
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 9.7e-79 298.5 493 45.8
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 1.2e-76 291.6 468 48.3
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 7.7e-76 288.9 467 45.2
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 1.3e-75 288.1 531 42.9
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 1.7e-75 287.7 510 41.8
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 2.9e-75 287.0 469 47.8
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 2.9e-75 287.0 405 45.4
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 1.4e-74 284.6 451 48.8
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 2.5e-74 283.9 473 45.7
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 4.2e-74 283.1 339 53.1
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 1.6e-73 281.2 477 42.1
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.6e-73 281.2 429 45.9
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 4.7e-73 279.6 485 43.5
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 7.9e-73 278.9 378 50.0
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 7.9e-73 278.9 395 51.4
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 1.4e-72 278.1 377 50.4
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.4e-72 278.1 462 43.5
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 8.8e-72 275.4 499 43.1
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 3.3e-71 273.5 468 42.3
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 5.7e-71 272.7 391 50.9
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 2.2e-70 270.8 310 51.6
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 6.3e-70 269.2 374 46.3
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 4.1e-69 266.5 457 43.8
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 7.7e-68 262.3 562 38.8
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 1.7e-67 261.2 435 43.2
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 1.4e-66 258.1 377 45.6
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 2.5e-66 257.3 460 42.8
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 2.5e-66 257.3 320 54.1
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 7.2e-66 255.8 409 44.3
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 6.1e-65 252.7 474 40.3
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 2.3e-64 250.8 424 44.6
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.1e-63 248.4 473 38.5
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 8.2e-62 242.3 470 40.6
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 1.8e-61 241.1 446 43.0
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 3.1e-61 240.4 324 46.6
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 3.1e-61 240.4 324 46.6
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 4.1e-61 240.0 326 46.9
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 4.1e-61 240.0 417 46.5
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 1.2e-60 238.4 327 49.2
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 5.9e-60 236.1 324 43.5
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 6.5e-59 232.6 306 50.0
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 1.1e-58 231.9 324 43.2
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 1.5e-58 231.5 318 47.5
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 1.5e-58 231.5 464 39.4
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 3.2e-58 230.3 318 47.5
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 5.5e-58 229.6 415 40.0
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 7.2e-58 229.2 442 41.9
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 7.2e-58 229.2 318 47.2
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 4.7e-57 226.5 316 49.7
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 4.7e-57 226.5 316 49.7
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 4.7e-57 226.5 399 42.9
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 8.0e-57 225.7 339 42.8
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.8e-56 224.6 338 42.3
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 4.0e-56 223.4 470 41.5
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 7.5e-55 219.2 464 39.7
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 1.8e-53 214.5 360 43.9
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 5.3e-53 213.0 315 46.7
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 3.5e-52 210.3 458 39.7
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 2.9e-51 207.2 423 39.7
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 5.0e-51 206.5 370 41.9
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 5.0e-51 206.5 356 42.7
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 6.5e-51 206.1 320 46.6
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 1.5e-50 204.9 346 40.5
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 3.2e-50 203.8 467 40.3
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 7.2e-50 202.6 412 39.1
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 1.2e-49 201.8 327 40.7
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.1e-49 201.1 337 45.1
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 6.1e-49 199.5 359 41.8
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 3.7e-46 190.3 409 41.8
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 3.7e-46 190.3 308 39.9
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 3.7e-46 190.3 323 42.1
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.8e-45 188.0 514 34.4
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 7.0e-45 186.0 342 44.2
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 7.0e-45 186.0 454 33.9
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 1.2e-44 185.3 391 42.2
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 2.3e-43 181.0 211 51.2
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 3.8e-43 180.3 470 36.0
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 5.5e-42 176.4 387 35.7
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 5.5e-42 176.4 449 38.8
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 2.8e-41 174.1 498 35.3
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 4.7e-41 173.3 473 35.9
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 6.1e-41 172.9 495 34.3
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 6.1e-41 172.9 478 38.5
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 3.0e-40 170.6 313 43.8
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 6.8e-40 169.5 362 41.4
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 3.2e-37 160.6 220 45.5
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 2.9e-35 154.1 367 35.7
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 1.5e-34 151.8 358 39.1
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.0e-31 141.4 261 38.7
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 1.7e-30 138.3 363 32.0
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 5.4e-29 133.3 364 31.9
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 9.2e-29 132.5 193 47.7
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.5e-26 125.2 259 39.0
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 1.6e-25 121.7 362 33.4
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.6e-25 121.7 323 29.7
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 8.0e-25 119.4 160 56.9
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 1.9e-21 108.2 410 30.5
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 5.4e-21 106.7 364 31.9
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 6.0e-20 103.2 225 36.4
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 1.3e-19 102.1 281 34.2
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 6.6e-19 99.8 396 28.8
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 8.6e-19 99.4 220 35.5
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 2.5e-18 97.8 300 31.0
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 1.6e-17 95.1 305 30.2
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 4.7e-17 93.6 80 62.5
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 2.3e-16 91.3 203 39.4
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 3.1e-16 90.9 99 51.5
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 3.4e-15 87.4 99 53.5
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 7.6e-15 86.3 482 27.2
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 3.7e-14 84.0 159 39.0
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 1.6e-12 78.6 245 30.2
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 1.3e-11 75.5 346 25.7
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 8.6e-11 72.8 88 50.0
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 2.5e-10 71.2 291 36.1
ATR0697G055 Amborella trichopoda HOM05D003044 ORTHO05D001869 7.3e-10 69.7 266 28.6
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 1.6e-09 68.6 250 28.4
Potri.010G244700 Populus trichocarpa HOM05D003044 ORTHO05D001869 8.1e-09 66.2 266 25.2
Prupe.2G074800 Prunus persica HOM05D003044 ORTHO05D001869 8.1e-09 66.2 245 29.8
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 8.1e-09 66.2 258 32.6
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 1.1e-08 65.9 98 40.8
CAN.G143.56 Capsicum annuum HOM05D003044 ORTHO05D001869 1.1e-08 65.9 246 28.0
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 3.1e-08 64.3 264 31.8
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 4.0e-08 63.9 257 28.8
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 5.2e-08 63.5 272 31.2
Solyc11g006390.2 Solanum lycopersicum HOM05D003044 ORTHO05D001869 6.8e-08 63.2 279 31.9
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 3.4e-07 60.8 273 29.7
HanXRQChr06g0180441 Helianthus annuus HOM05D006756 ORTHO05D001869 4.4e-07 60.5 268 29.5
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 4.4e-07 60.5 246 25.6
SGA_v2.0_scaffold121G33034 Striga asiatica HOM05D005642 ORTHO05D006672 4.4e-07 60.5 169 29.0
Gohir.D04G018900 Gossypium hirsutum HOM05D003044 ORTHO05D001869 5.8e-07 60.1 246 29.3
Ciclev10007561m.g Citrus clementina HOM05D006756 ORTHO05D001869 7.6e-07 59.7 308 26.6
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 7.6e-07 59.7 241 30.7
Potri.008G014800 Populus trichocarpa HOM05D003044 ORTHO05D001869 9.9e-07 59.3 247 27.5
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 1.3e-06 58.9 260 27.7
Hma1.2p1_0098F.1_g048320 Hydrangea macrophylla HOM05D003044 ORTHO05D001869 1.3e-06 58.9 260 28.5
Gorai.012G022400 Gossypium raimondii HOM05D003044 ORTHO05D001869 1.7e-06 58.5 246 28.9
Lj2A36T50 Lonicera japonica HOM05D003044 ORTHO05D001869 2.2e-06 58.2 166 30.7
DCAR_018987 Daucus carota HOM05D003044 ORTHO05D001869 2.9e-06 57.8 277 27.1
FvH4_7g05480 Fragaria vesca HOM05D003044 ORTHO05D001869 2.9e-06 57.8 256 28.5
Nitab4.5_0001781g0070 Nicotiana tabacum HOM05D003044 ORTHO05D001869 2.9e-06 57.8 265 31.3
Peaxi162Scf00519g00028 Petunia axillaris HOM05D003044 ORTHO05D001869 2.9e-06 57.8 241 23.7
Cfa010501 Carpinus fangiana HOM05D003044 ORTHO05D001869 3.8e-06 57.4 284 26.4
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 3.8e-06 57.4 391 27.4
SGA_v2.0_scaffold169G38591 Striga asiatica HOM05D005642 ORTHO05D006672 4.9e-06 57.0 196 31.1
FvH4_7g05440 Fragaria vesca HOM05D003044 ORTHO05D001869 6.4e-06 56.6 258 28.3
Sopen05g033570 Solanum pennellii HOM05D003044 ORTHO05D001869 6.4e-06 56.6 220 33.6
Thecc.10G119700 Theobroma cacao HOM05D003044 ORTHO05D001869 8.4e-06 56.2 248 25.8


User provided reference genes

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