Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G187400 Theobroma cacao HOM05D003906 ORTHO05D004776 2.1e-64 248.8 124 100.0
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 5.7e-57 224.2 123 91.1
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 1.3e-53 213.0 121 85.1
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 5.5e-52 207.6 121 82.6
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 1.2e-51 206.5 123 84.6
Cpa.g.c30412.1 Carica papaya HOM05D003906 ORTHO05D004776 2.7e-51 205.3 123 82.1
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 2.7e-51 205.3 118 86.4
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 7.9e-51 203.8 121 82.6
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 1.0e-50 203.4 121 81.8
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 1.8e-50 202.6 118 83.1
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 8.2e-48 193.7 120 79.2
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 1.1e-47 193.4 121 78.5
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 3.1e-47 191.8 121 78.5
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 3.1e-47 191.8 121 77.7
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 3.1e-47 191.8 121 78.5
RcHm_v2.0_Chr7g0228471 Rosa chinensis HOM05D003906 ORTHO05D004776 5.3e-47 191.0 118 80.5
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 6.9e-47 190.7 117 78.6
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 9.0e-47 190.3 121 76.9
ClCG08G000300 Citrullus lanatus HOM05D003906 ORTHO05D004776 1.5e-46 189.5 116 78.4
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 1.5e-46 189.5 123 76.4
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 1.5e-46 189.5 119 80.7
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 2.0e-46 189.1 120 76.7
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 2.6e-46 188.7 118 78.0
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 3.4e-46 188.3 118 76.3
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 7.7e-46 187.2 114 80.7
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 7.7e-46 187.2 116 79.3
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 7.7e-46 187.2 116 79.3
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 7.7e-46 187.2 116 77.6
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 1.0e-45 186.8 121 76.9
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 1.3e-45 186.4 115 76.5
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 2.2e-45 185.7 118 75.4
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 2.2e-45 185.7 118 75.4
Cfa012929 Carpinus fangiana HOM05D003906 ORTHO05D004776 2.2e-45 185.7 121 76.9
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 2.9e-45 185.3 117 74.4
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 2.9e-45 185.3 118 77.1
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 3.8e-45 184.9 116 75.0
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 3.8e-45 184.9 123 74.8
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 5.0e-45 184.5 117 74.4
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.5e-44 182.2 124 75.0
Nn3g18941 Nelumbo nucifera HOM05D003906 ORTHO05D004776 3.2e-44 181.8 120 73.3
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 4.2e-44 181.4 115 80.0
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 7.2e-44 180.6 118 75.4
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 1.2e-43 179.9 118 74.6
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 2.1e-43 179.1 118 74.6
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 2.1e-43 179.1 122 73.8
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 2.1e-43 179.1 118 72.9
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 4.6e-43 177.9 115 77.4
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 6.1e-43 177.6 118 75.4
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 1.4e-42 176.4 123 71.5
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 2.3e-42 175.6 118 72.9
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 3.9e-42 174.9 118 72.9
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 3.9e-42 174.9 115 72.2
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 3.9e-42 174.9 117 70.1
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 6.7e-42 174.1 118 72.0
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 8.8e-42 173.7 114 73.7
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 1.1e-41 173.3 117 69.2
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 1.1e-41 173.3 117 70.1
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 2.5e-41 172.2 116 69.8
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 3.3e-41 171.8 117 71.8
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 5.7e-41 171.0 118 66.9
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 5.7e-41 171.0 118 66.1
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 7.4e-41 170.6 117 68.4
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 9.7e-41 170.2 116 75.9
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 9.7e-41 170.2 117 66.7
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 1.7e-40 169.5 116 70.7
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 2.2e-40 169.1 106 78.3
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 2.2e-40 169.1 116 68.1
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 2.8e-40 168.7 118 70.3
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 3.7e-40 168.3 118 65.3
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 6.3e-40 167.5 116 70.7
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 1.1e-39 166.8 118 68.6
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 1.4e-39 166.4 117 70.9
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 3.1e-39 165.2 119 69.7
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 1.2e-38 163.3 114 67.5
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 1.5e-38 162.9 120 68.3
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 2.0e-38 162.5 118 66.9
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 3.4e-38 161.8 120 68.3
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 4.5e-38 161.4 118 68.6
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 1.0e-37 160.2 116 65.5
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 1.3e-37 159.8 118 66.1
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 1.3e-37 159.8 118 68.6
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 1.7e-37 159.5 118 67.8
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 1.7e-37 159.5 118 67.8
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 1.7e-37 159.5 118 67.8
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 2.2e-37 159.1 118 68.6
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 2.9e-37 158.7 115 66.1
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 3.8e-37 158.3 114 65.8
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 8.5e-37 157.1 118 67.8
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 8.5e-37 157.1 118 64.4
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 1.1e-36 156.8 115 66.1
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 2.5e-36 155.6 116 66.4
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 3.2e-36 155.2 113 63.7
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 4.2e-36 154.8 119 64.7
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 5.5e-36 154.5 117 63.2
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 1.6e-35 152.9 116 69.0
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 1.6e-35 152.9 116 63.8
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 2.1e-35 152.5 117 64.1
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 2.7e-35 152.1 116 68.1
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 4.7e-35 151.4 114 63.2
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 5.1e-34 147.9 117 60.7
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 5.1e-34 147.9 115 61.7
CARHR034230 Cardamine hirsuta HOM05D003906 ORTHO05D004776 6.7e-34 147.5 115 63.5
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 8.8e-34 147.1 116 63.8
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 1.1e-33 146.7 111 67.6
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 2.6e-33 145.6 123 62.6
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 2.6e-33 145.6 116 62.9
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 1.7e-32 142.9 117 63.2
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 1.7e-32 142.9 117 63.2
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 3.7e-32 141.7 123 61.0
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 3.7e-32 141.7 123 61.0
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 3.7e-32 141.7 114 59.6
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 4.8e-32 141.4 117 63.2
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 4.8e-32 141.4 122 61.5
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 4.8e-32 141.4 117 63.2
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 4.8e-32 141.4 115 60.0
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 1.1e-31 140.2 123 60.2
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 1.1e-31 140.2 118 61.9
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 1.1e-31 140.2 118 61.9
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 7.0e-31 137.5 116 61.2
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 9.1e-31 137.1 123 60.2
CAN.G354.54 Capsicum annuum HOM05D003906 ORTHO05D004776 4.5e-30 134.8 95 63.2
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 1.0e-29 133.7 93 64.5
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 2.2e-29 132.5 105 61.0
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 2.9e-29 132.1 113 56.6
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 8.5e-29 130.6 117 58.1
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.1e-28 130.2 109 57.8
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 1.9e-28 129.4 116 58.6
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 1.9e-28 129.4 114 61.4
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 1.4e-26 123.2 119 54.6
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.3e-26 122.5 123 52.0
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 2.3e-26 122.5 122 52.5
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 2.3e-26 122.5 118 55.9
DCAR_028620 Daucus carota HOM05D003906 ORTHO05D004776 2.8e-24 115.5 99 54.5
DCAR_028622 Daucus carota HOM05D003906 ORTHO05D004776 2.8e-24 115.5 99 54.5
Sed0013629 Sechium edule HOM05D003906 ORTHO05D004776 2.5e-20 102.4 115 47.8
Migut.C00143 Erythranthe guttata HOM05D003906 ORTHO05D004776 1.8e-18 96.3 115 46.1
PGSC0003DMG400022553 Solanum tuberosum HOM05D003906 ORTHO05D004776 3.1e-15 85.5 55 65.5
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.4e-07 60.1 98 37.8
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.4e-07 60.1 98 37.8
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 3.5e-06 55.5 78 41.0
MD08G1023000 Malus domestica HOM05D006583 ORTHO05D008134 7.7e-06 54.3 101 34.7


User provided reference genes

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