Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G140000 Theobroma cacao HOM05D000032 ORTHO05D007039 1.3e-54 216.5 113 100.0
Thecc.08G139100 Theobroma cacao HOM05D000032 ORTHO05D007039 8.4e-41 170.6 92 96.7
Duzib041G0456 Durio zibethinus HOM05D000032 ORTHO05D007039 6.3e-36 154.5 93 87.1
COL.COLO4_35483 Corchorus olitorius HOM05D000032 ORTHO05D007039 1.5e-34 149.8 93 84.9
Gohir.D02G075100 Gossypium hirsutum HOM05D000032 ORTHO05D007039 8.5e-33 144.1 93 80.6
Gorai.005G084500 Gossypium raimondii HOM05D000032 ORTHO05D007039 1.4e-32 143.3 93 80.6
Gohir.A02G068600 Gossypium hirsutum HOM05D000032 ORTHO05D007039 1.2e-31 140.2 93 80.6
ClCG10G008660 Citrullus lanatus HOM05D000032 ORTHO05D007039 3.1e-27 125.6 93 71.0
Ciclev10000341m.g Citrus clementina HOM05D000032 ORTHO05D007039 3.1e-27 125.6 91 76.9
Haze_01423 Corylus avellana HOM05D000032 ORTHO05D007039 4.1e-27 125.2 93 73.1
Sed0020079 Sechium edule HOM05D000032 ORTHO05D007039 4.1e-27 125.2 93 71.0
Cfa015213 Carpinus fangiana HOM05D000032 ORTHO05D007039 5.3e-27 124.8 93 73.1
Potri.005G185900 Populus trichocarpa HOM05D000032 ORTHO05D007039 9.1e-27 124.0 92 75.0
CiPaw.16G019200 Carya illinoinensis HOM05D000032 ORTHO05D007039 2.6e-26 122.5 93 72.0
QL09p029474 Quercus lobata HOM05D000032 ORTHO05D007039 2.6e-26 122.5 93 73.1
TWI32G0140 Tripterygium wilfordii HOM05D000032 ORTHO05D007039 3.4e-26 122.1 92 71.7
Manes.04G035200 Manihot esculenta HOM05D000032 ORTHO05D007039 4.5e-26 121.7 93 72.0
TPR.G34855 Trifolium pratense HOM05D000032 ORTHO05D007039 4.5e-26 121.7 93 71.0
GSVIVG01009983001 Vitis vinifera HOM05D000032 ORTHO05D007039 5.9e-26 121.3 92 70.7
Cpa.g.sc26.76 Carica papaya HOM05D000032 ORTHO05D007039 1.7e-25 119.8 87 77.0
Ca_18908_v3 Cicer arietinum L. HOM05D000032 ORTHO05D007039 1.7e-25 119.8 93 71.0
MELO3C017528.2 Cucumis melo HOM05D000032 ORTHO05D007039 2.2e-25 119.4 93 66.7
CsaV3_1G045380 Cucumis sativus L. HOM05D000032 ORTHO05D007039 2.2e-25 119.4 92 67.4
VMungo0331G2050 Vigna mungo HOM05D000032 ORTHO05D007039 5.0e-25 118.2 92 66.3
Eucgr.F02760 Eucalyptus grandis HOM05D000032 ORTHO05D007039 1.1e-24 117.1 92 71.7
Medtr4g079320 Medicago truncatula HOM05D000032 ORTHO05D007039 1.4e-24 116.7 93 68.8
Rhsim07G0177900 Rhododendron simsii HOM05D003181 ORTHO05D007039 1.4e-24 116.7 93 71.0
Glyma.03G001200 Glycine max HOM05D000032 ORTHO05D007039 2.5e-24 115.9 93 66.7
arahy.Tifrunner.gnm1.ann1.5XB3VI Arachis hypogaea HOM05D000032 ORTHO05D007039 7.2e-24 114.4 92 67.4
Sabra05G0142000 Salix brachista HOM05D001345 ORTHO05D007039 9.4e-24 114.0 93 69.9
arahy.Tifrunner.gnm1.ann1.KPVC5H Arachis hypogaea HOM05D000032 ORTHO05D007039 1.6e-23 113.2 92 66.3
Phvul.010G059900 Phaseolus vulgaris HOM05D000032 ORTHO05D007039 1.6e-23 113.2 93 64.5
Glyma.16G221700 Glycine max HOM05D000032 ORTHO05D007039 2.1e-23 112.8 92 63.0
MD07G1108300 Malus domestica HOM05D000032 ORTHO05D007039 2.1e-23 112.8 91 71.4
Psat7g166920 Pisum sativum HOM05D000032 ORTHO05D007039 6.1e-23 111.3 92 67.4
Dinv25780 Davidia involucrata HOM05D000032 ORTHO05D007039 1.0e-22 110.5 89 75.3
vmacro05140 Vaccinium macrocarpon HOM05D000032 ORTHO05D007039 1.0e-22 110.5 93 66.7
Prupe.2G131100 Prunus persica HOM05D000032 ORTHO05D007039 1.8e-22 109.8 91 69.2
Hma1.2p1_0107F.1_g051290 Hydrangea macrophylla HOM05D000032 ORTHO05D007039 5.1e-22 108.2 92 68.5
Oeu045989.1 Olea europaea HOM05D000032 ORTHO05D007039 5.1e-22 108.2 91 65.9
MBI02_g35824_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007039 8.8e-22 107.5 92 64.1
CSS0036844 Camellia sinensis var. sinensis HOM05D000032 ORTHO05D007039 1.5e-21 106.7 93 64.5
MBI03_g28958_MAGBIO Magnolia biondii HOM05D000032 ORTHO05D007039 2.6e-21 105.9 92 63.0
Lj3g0011799 Lotus japonicus HOM05D000032 ORTHO05D007039 3.3e-21 105.5 93 62.4
TAR381G0052 Trochodendron aralioides HOM05D000032 ORTHO05D007039 1.3e-20 103.6 92 65.2
Nn2g15381 Nelumbo nucifera HOM05D000032 ORTHO05D007039 1.7e-20 103.2 94 68.1
RcHm_v2.0_Chr6g0277821 Rosa chinensis HOM05D000032 ORTHO05D007039 2.2e-20 102.8 91 68.1
DCAR_014397 Daucus carota HOM05D000032 ORTHO05D007039 2.8e-20 102.4 92 62.0
Nitab4.5_0003942g0070 Nicotiana tabacum HOM05D000032 ORTHO05D007039 2.8e-20 102.4 92 60.9
Nitab4.5_0003348g0030 Nicotiana tabacum HOM05D000032 ORTHO05D007039 3.7e-20 102.1 92 59.8
Lj4A689G43 Lonicera japonica HOM05D000032 ORTHO05D007039 4.8e-20 101.7 94 60.6
Lju3549A0T30 Lonicera japonica HOM05D000032 ORTHO05D007039 1.1e-19 100.5 94 59.6
SGA_v2.0_scaffold25G11147 Striga asiatica HOM05D000032 ORTHO05D007039 1.4e-19 100.1 85 67.1
SalBow6G7032 Salvia bowleyana HOM05D000032 ORTHO05D007039 3.1e-19 99.0 92 62.0
Cc00_g22660 Coffea canephora HOM05D000032 ORTHO05D007039 6.9e-19 97.8 83 67.5
FAN20G1738 Fragaria x ananassa HOM05D001345 ORTHO05D007039 6.9e-19 97.8 92 64.1
CAN.G313.11 Capsicum annuum HOM05D000032 ORTHO05D007039 1.2e-18 97.1 87 59.8
FvH4_2g15160 Fragaria vesca HOM05D000032 ORTHO05D007039 1.2e-18 97.1 92 63.0
FAN24G0655 Fragaria x ananassa HOM05D000032 ORTHO05D007039 1.2e-18 97.1 92 63.0
FAN27G2140 Fragaria x ananassa HOM05D000032 ORTHO05D007039 1.5e-18 96.7 92 63.0
Peaxi162Scf00066g01631 Petunia axillaris HOM05D000032 ORTHO05D007039 2.0e-18 96.3 91 57.1
Aa31LG4G7090 Aethionema arabicum HOM05D000032 ORTHO05D007039 4.5e-18 95.1 92 62.0
HanXRQChr15g0473601 Helianthus annuus HOM05D000032 ORTHO05D007039 5.9e-18 94.7 92 60.9
ATR0584G252 Amborella trichopoda HOM05D000032 ORTHO05D007039 1.3e-17 93.6 92 56.5
CARHR070560 Cardamine hirsuta HOM05D000032 ORTHO05D007039 1.3e-17 93.6 92 56.5
THA.LOC104812064 Tarenaya hassleriana HOM05D000032 ORTHO05D007039 1.3e-17 93.6 93 63.4
CDE11G0771 Ceratophyllum demersum HOM05D000032 ORTHO05D007039 1.7e-17 93.2 93 57.0
AUR62007669 Chenopodium quinoa HOM05D000032 ORTHO05D007039 1.7e-17 93.2 92 56.5
Solyc10g009070.3 Solanum lycopersicum HOM05D000032 ORTHO05D007039 2.2e-17 92.8 91 53.8
Sopen10g004850 Solanum pennellii HOM05D000032 ORTHO05D007039 2.2e-17 92.8 91 53.8
Lalb_Chr13g0294911 Lupinus albus HOM05D000032 ORTHO05D007039 2.9e-17 92.4 97 53.6
AT1G77030 Arabidopsis thaliana HOM05D000032 ORTHO05D007039 5.0e-17 91.7 92 58.7
Hund17378 Selenicereus undatus HOM05D000032 ORTHO05D007039 5.0e-17 91.7 93 60.2
FAN15G1637 Fragaria x ananassa HOM05D000032 ORTHO05D007039 6.5e-17 91.3 92 62.0
CDE05G3385 Ceratophyllum demersum HOM05D000032 ORTHO05D007039 4.2e-16 88.6 93 53.8
AL2G37210 Arabidopsis lyrata HOM05D000032 ORTHO05D007039 1.2e-15 87.0 86 60.5
AUR62013465 Chenopodium quinoa HOM05D000032 ORTHO05D007039 3.6e-15 85.5 92 53.3
Lsat_1_v5_gn_1_39880 Lactuca sativa HOM05D000703 ORTHO05D007039 4.7e-15 85.1 93 52.7
unitig_52.g17544 Utricularia gibba HOM05D000032 ORTHO05D007039 4.7e-15 85.1 81 55.6
Migut.N03249 Erythranthe guttata HOM05D000032 ORTHO05D007039 6.1e-15 84.7 125 46.4
SHI09252 Sapria himalayana HOM05D000032 ORTHO05D007039 6.1e-15 84.7 93 53.8
HPP92_015492 Vanilla planifolia HOM05D000032 ORTHO05D007039 6.1e-15 84.7 93 49.5
Thhalv10018119m.g Eutrema salsugineum HOM05D000032 ORTHO05D007039 1.0e-14 84.0 86 59.3
ECA248G0200 Erigeron canadensis HOM05D000032 ORTHO05D007039 1.4e-14 83.6 90 54.4
Aqoxy5G02326 Aquilegia oxysepala HOM05D000032 ORTHO05D007039 2.3e-14 82.8 107 47.7
BcaB02g07093 Brassica carinata HOM05D000032 ORTHO05D007039 2.3e-14 82.8 93 52.7
BcaNung04681 Brassica carinata HOM05D000032 ORTHO05D007039 2.3e-14 82.8 93 52.7
C06p31480 Brassica napus HOM05D000032 ORTHO05D007039 2.3e-14 82.8 93 52.7
BolC6t38280H Brassica oleracea HOM05D000032 ORTHO05D007039 2.3e-14 82.8 93 52.7
Carub.0002s2395 Capsella rubella HOM05D000032 ORTHO05D007039 2.3e-14 82.8 83 59.0
BcaNung04684 Brassica carinata HOM05D000032 ORTHO05D007039 5.2e-14 81.6 93 51.6
BraA07t30454Z Brassica rapa HOM05D000032 ORTHO05D007039 8.8e-14 80.9 93 51.6
PGR042G3397 Punica granatum HOM05D000032 ORTHO05D007039 8.8e-14 80.9 91 52.7
A07p28090 Brassica napus HOM05D000032 ORTHO05D007039 2.0e-13 79.7 93 50.5
SEGI_17341 Sequoiadendron giganteum HOM05D000032 ORTHO05D007039 2.0e-13 79.7 92 48.9
Glyma.16G116400 Glycine max HOM05D000032 ORTHO05D007039 3.3e-13 79.0 66 63.6
Sp5g32190 Schrenkiella parvula HOM05D000032 ORTHO05D007039 5.7e-13 78.2 93 50.5
Zm00001eb179010 Zea mays HOM05D000032 ORTHO05D007039 4.8e-12 75.1 91 45.1
PSO017G0672 Papaver somniferum HOM05D000032 ORTHO05D007039 6.3e-12 74.7 101 45.5
EL10Ac1g01414 Beta vulgaris HOM05D000032 ORTHO05D007039 8.2e-12 74.3 92 52.2
PSO478G2531 Papaver somniferum HOM05D000032 ORTHO05D007039 1.4e-11 73.6 101 45.5
Actinidia10684 Actinidia chinensis HOM05D000032 ORTHO05D007039 2.4e-11 72.8 60 66.7
BcaB02g07095 Brassica carinata HOM05D000032 ORTHO05D007039 4.1e-11 72.0 86 50.0
Os08g0416100 Oryza sativa ssp. japonica HOM05D000032 ORTHO05D007039 9.1e-11 70.9 91 44.0
AagrBONN_evm.TU.Sc2ySwM_228.4830 Anthoceros agrestis HOM05D000032 ORTHO05D007039 7.7e-10 67.8 92 41.3
Pp3c14_6810 Physcomitrium patens HOM05D000032 ORTHO05D007039 1.3e-09 67.0 95 44.2
SMO361G0600 Selaginella moellendorffii HOM05D000032 ORTHO05D007039 1.3e-09 67.0 90 47.8
Mapoly0165s0019 Marchantia polymorpha HOM05D000032 ORTHO05D007039 2.2e-09 66.2 93 45.2
SMO361G0757 Selaginella moellendorffii HOM05D000032 ORTHO05D007039 3.8e-09 65.5 90 45.6
CANSAT80G2781 Cannabis sativa HOM05D000032 ORTHO05D007039 1.0e-06 57.4 33 78.8


User provided reference genes

Program Settings