Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 8.8e-151 537.0 277 100.0
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 9.4e-137 490.3 277 91.3
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 1.0e-135 486.9 277 91.0
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 8.8e-135 483.8 277 90.6
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 8.8e-135 483.8 277 90.6
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 2.8e-133 478.8 277 89.5
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 5.9e-131 471.1 277 87.4
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 4.7e-128 461.5 277 87.0
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.0e-127 458.8 277 87.4
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 1.5e-126 456.4 277 87.0
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 1.0e-122 443.7 275 83.3
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 5.8e-118 427.9 278 82.4
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 6.4e-117 424.5 277 81.2
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 1.0e-114 417.2 276 78.6
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.1e-113 413.7 280 80.4
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 1.5e-113 413.3 279 79.2
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.9e-113 412.9 277 78.0
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.9e-113 412.9 277 78.0
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.5e-113 412.5 277 78.0
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 2.5e-113 412.5 278 79.5
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.6e-113 411.4 263 82.1
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 1.2e-112 410.2 279 79.6
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 1.6e-112 409.8 272 80.1
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 4.7e-112 408.3 277 80.1
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 8.1e-112 407.5 276 78.3
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.1e-111 407.1 277 77.6
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 1.4e-111 406.8 277 79.4
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 4.0e-111 405.2 281 76.9
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 6.8e-111 404.4 276 77.9
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.5e-110 403.3 275 78.9
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 3.4e-110 402.1 276 78.3
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 3.4e-110 402.1 277 79.1
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 4.4e-110 401.7 281 78.3
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 5.8e-110 401.4 277 78.7
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 9.8e-110 400.6 277 76.9
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 1.7e-109 399.8 276 77.9
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 2.2e-109 399.4 285 75.4
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 8.3e-109 397.5 277 76.5
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 9.2e-108 394.0 277 78.0
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 9.2e-108 394.0 277 78.0
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 9.2e-108 394.0 277 75.8
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 1.2e-107 393.7 277 77.3
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 3.5e-107 392.1 279 75.3
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 3.5e-107 392.1 282 76.2
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 6.0e-107 391.3 277 76.9
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 6.0e-107 391.3 277 77.6
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 1.3e-106 390.2 276 78.6
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 3.9e-106 388.7 277 76.9
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 3.3e-105 385.6 276 76.4
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 5.6e-105 384.8 277 75.1
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 7.3e-105 384.4 275 76.0
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.6e-104 383.3 276 75.7
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 2.1e-104 382.9 280 74.6
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.1e-104 382.9 276 75.0
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.8e-104 382.5 279 73.8
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 6.2e-104 381.3 277 74.7
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 1.1e-103 380.6 277 76.2
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 1.1e-103 380.6 277 76.2
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 1.1e-103 380.6 277 76.2
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 1.1e-103 380.6 277 76.2
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 1.4e-103 380.2 255 79.6
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 3.1e-103 379.0 278 75.5
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 3.1e-103 379.0 276 75.0
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 3.1e-103 379.0 276 75.7
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 4.0e-103 378.6 277 75.8
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 4.0e-103 378.6 276 75.4
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 5.2e-103 378.3 274 77.0
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 5.2e-103 378.3 274 77.0
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 5.2e-103 378.3 276 73.6
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 6.8e-103 377.9 270 73.3
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.2e-102 377.1 277 75.5
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 1.5e-102 376.7 276 75.4
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 2.0e-102 376.3 276 74.6
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 2.0e-102 376.3 277 75.1
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 3.4e-102 375.6 278 74.8
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 3.4e-102 375.6 276 74.6
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 3.4e-102 375.6 278 74.8
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 3.4e-102 375.6 276 74.6
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 4.4e-102 375.2 276 73.9
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 5.8e-102 374.8 278 73.0
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 5.8e-102 374.8 278 75.9
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 7.6e-102 374.4 277 73.3
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 9.9e-102 374.0 278 74.1
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 9.9e-102 374.0 277 74.7
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.3e-101 373.6 286 72.7
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 1.7e-101 373.2 278 74.5
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 2.2e-101 372.9 236 82.6
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 2.9e-101 372.5 276 72.5
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 2.9e-101 372.5 278 74.1
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 3.7e-101 372.1 279 72.8
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 6.4e-101 371.3 276 75.7
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 6.4e-101 371.3 274 74.5
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 8.4e-101 370.9 278 75.9
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.1e-100 370.5 278 72.3
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 1.1e-100 370.5 285 71.9
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 1.1e-100 370.5 285 72.3
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.9e-100 369.8 285 69.8
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 5.4e-100 368.2 276 72.1
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 1.6e-99 366.7 285 71.6
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 4.6e-99 365.2 227 83.7
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 7.8e-99 364.4 247 77.7
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 7.8e-99 364.4 277 74.4
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 1.0e-98 364.0 277 72.9
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 2.3e-98 362.8 278 72.3
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 5.6e-97 358.2 287 67.2
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 1.2e-96 357.1 248 77.0
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 4.7e-96 355.1 196 88.8
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 8.1e-96 354.4 213 85.4
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 1.4e-95 353.6 276 70.3
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 3.1e-95 352.4 277 71.5
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 1.5e-94 350.1 291 67.7
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.6e-94 349.4 285 67.0
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 4.4e-94 348.6 277 72.2
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 1.7e-93 346.7 214 84.1
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 2.2e-93 346.3 281 68.3
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.1e-92 344.0 278 69.4
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 9.6e-89 330.9 194 84.5
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 5.3e-87 325.1 221 74.2
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 2.4e-84 316.2 288 62.5
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 2.1e-83 313.2 197 78.7
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 2.5e-81 306.2 219 72.1
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.2e-75 287.3 168 85.1
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.6e-75 287.0 243 67.1
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 2.1e-72 276.6 196 76.5
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 3.0e-66 256.1 163 82.2
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 4.8e-64 248.8 202 70.3
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 4.8e-64 248.8 198 72.2
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 3.4e-62 242.7 134 90.3
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 7.9e-59 231.5 161 70.2
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 3.8e-53 212.6 165 65.5
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 6.5e-53 211.8 276 50.7
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.8e-40 169.9 125 70.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.4e-39 167.5 230 50.4
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 3.1e-39 166.4 157 65.6
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.7e-37 160.6 96 79.2
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.5e-36 156.8 182 51.1
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.5e-36 156.8 182 51.1
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.7e-21 107.5 81 75.3
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 2.9e-21 106.7 114 57.0
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 3.0e-10 70.1 151 35.1
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 1.2e-09 68.2 175 31.4
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.7e-08 63.2 35 82.9
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 2.4e-07 60.5 60 50.0
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 3.2e-07 60.1 72 52.8


User provided reference genes

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