Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 0.0e+00 1207.2 698 100.0
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 4.7e-294 1014.2 698 86.1
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 9.2e-290 1000.0 696 84.6
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 9.2e-290 1000.0 698 84.2
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 1.5e-287 992.6 696 84.1
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.9e-287 992.3 696 83.9
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.8e-286 988.4 698 83.2
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.1e-285 984.9 698 83.0
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 6.5e-243 844.3 697 66.6
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 1.7e-238 829.7 700 71.9
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 1.1e-237 827.0 704 71.7
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 1.0e-224 783.9 696 67.7
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.8e-224 783.1 697 68.0
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 1.8e-224 783.1 702 66.8
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 6.3e-222 774.6 703 67.6
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 4.1e-221 771.9 702 68.8
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.4e-213 746.9 704 68.2
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 2.4e-213 746.1 703 65.3
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.7e-211 740.0 704 65.3
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 6.6e-211 738.0 704 66.1
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 4.2e-210 735.3 704 67.2
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 3.6e-209 732.3 700 66.7
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 2.2e-206 723.0 701 62.3
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 4.9e-206 721.8 704 63.8
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 5.4e-205 718.4 708 61.6
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.5e-204 715.3 704 63.9
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 6.6e-203 711.4 705 63.5
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 6.6e-203 711.4 755 57.0
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 3.6e-201 705.7 697 63.0
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 1.8e-200 703.4 727 60.8
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 3.4e-199 699.1 700 64.4
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.1e-197 694.1 703 56.3
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 3.2e-197 692.6 706 61.8
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 3.2e-197 692.6 704 64.2
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 7.0e-197 691.4 704 63.1
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 3.5e-196 689.1 708 60.6
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 4.6e-196 688.7 706 63.0
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 3.0e-195 686.0 704 62.9
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 9.5e-194 681.0 706 59.6
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 1.8e-192 676.8 702 62.8
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 2.0e-191 673.3 700 62.7
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.3e-190 670.6 703 63.0
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 4.9e-190 668.7 706 59.6
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 8.3e-190 667.9 698 62.0
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.1e-189 667.5 701 63.1
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.1e-189 667.5 698 61.3
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.4e-189 667.2 667 64.2
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 2.4e-189 666.4 702 62.0
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 1.6e-188 663.7 709 59.5
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 2.1e-188 663.3 701 62.6
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 4.6e-188 662.1 699 62.5
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.3e-187 659.8 705 55.5
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 3.9e-187 659.1 702 63.7
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 1.1e-186 657.5 699 62.5
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.9e-186 656.8 697 62.7
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 3.3e-186 656.0 719 59.2
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 9.5e-186 654.4 697 60.7
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 1.6e-185 653.7 699 62.7
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 2.8e-185 652.9 699 63.1
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 3.6e-185 652.5 702 62.1
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 6.2e-185 651.7 699 59.9
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 3.1e-184 649.4 702 62.1
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 4.0e-184 649.0 703 57.3
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 5.2e-184 648.7 705 61.1
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 2.6e-183 646.4 699 59.7
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 4.4e-183 645.6 696 61.5
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 4.4e-183 645.6 705 55.3
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 7.6e-183 644.8 703 58.2
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 6.4e-182 641.7 706 58.9
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 8.3e-182 641.3 703 59.5
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 1.1e-181 641.0 702 63.0
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 1.1e-181 641.0 729 58.2
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 2.4e-181 639.8 702 60.3
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 1.2e-180 637.5 703 59.0
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 2.1e-180 636.7 703 59.2
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 4.6e-180 635.6 632 66.9
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 7.8e-180 634.8 702 60.3
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 2.3e-179 633.3 766 46.9
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.9e-178 630.2 732 56.7
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 2.1e-177 626.7 706 58.4
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 2.4e-176 623.2 705 59.9
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 7.6e-175 618.2 703 58.6
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 9.9e-175 617.8 652 63.5
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 2.9e-174 616.3 737 53.3
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 8.4e-174 614.8 702 59.4
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 3.5e-172 609.4 706 59.2
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 3.5e-172 609.4 708 57.9
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 5.1e-171 605.5 700 56.7
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.8e-168 597.0 704 55.5
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.7e-166 590.5 705 58.2
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 3.2e-165 586.3 631 61.3
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.0e-163 579.7 706 48.2
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.6e-161 573.9 706 56.4
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 2.1e-161 573.5 696 56.8
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 8.4e-158 561.6 708 52.4
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 4.3e-154 549.3 697 57.1
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 7.4e-154 548.5 704 49.1
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.6e-153 547.4 481 72.6
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 2.2e-150 537.0 711 53.4
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 2.5e-149 533.5 706 55.1
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 4.6e-148 529.3 634 57.9
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 8.2e-145 518.5 574 60.6
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 2.7e-140 503.4 520 61.7
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.0e-139 500.0 520 55.0
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.5e-138 497.7 695 43.5
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 3.6e-132 476.5 710 43.2
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.3e-131 473.8 709 50.9
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 8.8e-131 471.9 726 47.4
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.5e-130 470.3 535 48.4
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.7e-129 466.5 729 44.7
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-127 459.9 518 59.7
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 3.8e-126 456.4 709 43.2
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 1.2e-124 451.4 699 42.3
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 3.7e-121 439.9 708 40.0
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 3.2e-117 426.8 630 54.9
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 2.7e-116 423.7 516 56.0
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 5.7e-106 389.4 530 48.9
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 6.1e-100 369.4 460 50.2
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.7e-97 360.1 314 65.9
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 8.6e-94 349.0 526 44.1
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 9.5e-85 318.9 722 44.2
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 8.0e-84 315.8 351 50.4
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-79 302.0 488 39.1
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 5.6e-77 293.1 421 53.4
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.5e-77 292.4 476 40.3
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 2.1e-71 274.6 253 77.5
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.7e-70 271.6 431 42.7
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 2.3e-70 271.2 276 67.0
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 3.1e-67 260.8 698 32.5
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 1.3e-65 255.4 200 65.5
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 5.4e-64 250.0 250 61.6
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 1.6e-52 211.8 273 50.5
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 4.2e-48 197.2 707 32.0
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 1.2e-47 195.7 122 78.7
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 1.2e-42 179.1 208 55.8
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.9e-40 171.8 132 69.7
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 1.3e-38 165.6 570 27.5
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.1e-35 156.0 159 64.8
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 2.4e-35 154.8 135 63.0
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-33 147.9 121 62.0
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 4.2e-32 144.1 225 45.8
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 9.3e-32 142.9 141 65.2
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 9.3e-32 142.9 527 28.3
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.7e-31 141.4 122 56.6
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.8e-30 138.7 110 67.3
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.8e-30 138.7 109 62.4
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 2.0e-26 125.2 159 45.9
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 7.6e-26 123.2 135 48.9
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-24 119.4 98 65.3
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 3.6e-23 114.4 260 33.5
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 3.6e-23 114.4 122 48.4
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.1e-22 110.5 94 63.8
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 4.8e-20 104.0 97 52.6
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.8e-20 104.0 96 55.2
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 1.4e-19 102.4 71 69.0
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 9.1e-19 99.8 169 40.2
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-18 97.8 96 52.1
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-18 97.8 96 52.1
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.9e-18 97.1 96 52.1
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 1.7e-17 95.5 147 42.2
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 7.2e-16 90.1 76 61.8
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.6e-15 87.4 96 47.9
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 4.6e-15 87.4 75 62.7
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.1e-15 87.0 65 69.2
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 2.3e-14 85.1 291 27.8
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.9e-14 84.3 96 49.0
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.7e-14 83.6 65 66.2
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.8e-14 83.2 65 67.7
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.8e-14 83.2 65 67.7
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-13 82.8 96 46.9
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.1e-13 82.8 65 66.2
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.5e-13 82.4 65 66.2
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.0e-13 82.0 257 27.2
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 2.0e-13 82.0 51 66.7
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.3e-13 81.3 95 47.4
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 3.1e-11 74.7 123 33.3
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 1.3e-09 69.3 63 57.1
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 1.7e-09 68.9 54 55.6
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 5.5e-08 63.9 58 58.6
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 9.4e-08 63.2 29 89.7
HanXRQChr11g0332681 Helianthus annuus HOM05D003682 ORTHO05D004224 7.9e-07 60.1 52 57.7
Lalb_Chr04g0252791 Lupinus albus HOM05D003682 ORTHO05D004224 2.3e-06 58.5 75 36.0


User provided reference genes

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