Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 4452.1 2297 100.0
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 3690.2 2265 84.1
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 3531.9 2263 80.2
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 3519.6 2263 80.0
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2664.0 2277 62.4
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2523.0 2267 59.2
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 2485.3 2239 58.9
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2405.9 2270 56.8
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2394.8 2246 56.7
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2382.1 2278 56.4
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2357.8 2262 56.4
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 2355.1 2255 56.1
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 2332.0 2237 56.1
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 2309.6 2285 54.7
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2284.6 2276 54.2
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2276.1 2330 53.6
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 2233.0 2256 53.6
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2198.3 2302 53.2
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2135.1 1387 78.6
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2131.7 2254 52.5
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 2122.4 2359 50.9
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 2095.5 2279 51.0
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 2090.8 2254 52.4
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 2089.7 2261 50.8
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 2079.3 2238 51.9
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2058.9 2237 52.2
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 2057.0 2280 50.9
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 2017.3 1796 59.4
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 2015.4 2281 50.4
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 2007.3 2305 50.2
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 2000.7 2251 49.1
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 1964.9 2236 48.4
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 1964.1 2251 49.0
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 1945.2 2254 49.1
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 1929.8 2247 48.2
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1923.3 2277 47.0
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 1921.7 2312 47.4
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 1920.2 2230 48.4
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1900.9 2246 48.5
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 1894.0 2255 46.9
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 1866.3 2261 46.5
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1848.6 2271 47.5
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 1848.6 2227 47.6
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1847.8 2236 46.3
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 1847.8 2228 47.1
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 1846.2 2242 47.4
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 1842.8 2276 46.3
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1838.2 2237 47.7
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 1831.6 2227 47.2
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 1829.7 2237 47.6
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 1819.3 2273 46.2
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 1818.1 2257 46.1
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 1812.7 2228 46.7
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 1810.8 2227 46.7
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1784.2 2305 44.6
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1780.8 2330 44.2
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1776.9 2231 45.9
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 1773.8 2242 45.8
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1771.5 2231 45.8
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 1770.4 2222 45.7
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1766.1 2335 44.7
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1757.7 2250 45.9
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1756.5 2226 45.4
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 1755.0 2229 45.4
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1744.6 2229 45.7
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1742.6 2314 45.3
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1734.9 2132 46.3
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1721.8 2238 45.0
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1703.3 2250 44.8
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1695.6 2243 44.6
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1691.8 2235 45.8
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1690.2 2244 46.0
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1677.5 2211 45.9
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1660.2 2252 45.1
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1651.3 2285 44.5
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1642.9 2044 47.0
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1631.7 2253 44.3
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1625.5 2097 45.5
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1614.0 2286 43.7
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1593.2 2228 43.0
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1585.5 2238 42.9
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1527.3 2237 41.9
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1526.9 2334 39.9
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1525.8 2226 42.0
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1516.1 2276 42.8
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1486.5 2256 41.3
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1474.1 2111 42.7
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1473.4 2239 41.9
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1433.7 1961 42.9
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1407.5 1882 44.8
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1374.4 2304 37.7
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1318.1 1677 44.4
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1270.8 1870 42.8
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1221.5 1719 41.5
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1206.0 1720 42.0
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 1174.1 2244 36.9
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 5.5e-291 1005.7 625 85.1
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.8e-281 974.2 1451 42.7
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 6.2e-258 896.0 790 61.3
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.6e-242 843.6 1253 41.7
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 1.6e-205 721.8 456 80.7
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 3.3e-195 687.6 2378 26.7
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 2.7e-189 667.9 2392 27.1
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 8.0e-189 666.4 582 61.5
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 2.5e-182 644.8 731 48.8
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 1.7e-170 605.5 1145 37.4
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 5.0e-167 594.0 703 47.5
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.6e-165 589.0 2187 27.4
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.2e-160 572.8 559 56.7
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 1.1e-158 566.2 608 51.3
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 4.3e-150 537.7 935 38.1
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.2e-149 536.2 764 42.7
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 2.6e-147 528.5 2425 26.1
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.4e-132 478.8 801 38.0
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.4e-130 470.7 926 34.6
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 4.3e-126 458.0 653 44.7
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 3.3e-118 431.8 422 55.5
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.7e-106 392.9 474 49.4
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 9.7e-102 377.1 675 36.9
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 2.0e-99 369.4 321 62.3
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 5.5e-97 361.3 614 38.6
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 4.3e-94 351.7 339 56.9
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 3.2e-89 335.5 2687 22.3
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 7.4e-86 324.3 396 45.5
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.9e-82 312.4 235 73.2
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.2e-72 280.4 264 56.4
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 6.8e-71 274.6 538 32.7
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 8.0e-64 251.1 152 82.2
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 1.7e-61 243.4 219 58.0
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 5.6e-57 228.4 189 65.6
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 3.7e-53 215.7 185 57.3
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 5.4e-52 211.8 177 60.5
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.7e-42 180.3 380 30.0
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 6.2e-40 171.8 233 45.1
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 5.8e-38 165.2 279 36.2
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 3.5e-35 156.0 270 36.7
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.6e-32 147.1 170 45.3
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 1.6e-32 147.1 140 52.9
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 8.1e-32 144.8 161 52.8
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 4.6e-27 129.0 125 53.6
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 6.6e-26 125.2 348 27.6
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 1.7e-21 110.5 156 42.9
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 2.1e-19 103.6 198 35.4
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 2.7e-19 103.2 114 46.5
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 3.9e-18 99.4 93 52.7
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 6.6e-18 98.6 335 25.7
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 6.6e-18 98.6 335 25.7
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 2.8e-16 93.2 137 38.7
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 3.1e-15 89.7 82 53.7
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.3e-13 84.3 434 24.0
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.3e-13 84.3 417 23.0
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 1.1e-12 81.3 102 43.1
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 2.1e-11 77.0 78 55.1
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.7e-11 76.6 108 35.2
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 4.6e-11 75.9 56 67.9
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 1.8e-10 73.9 79 51.9
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 5.1e-10 72.4 68 54.4
arahy.Tifrunner.gnm1.ann1.PHJ7DT Arachis hypogaea HOM05D003876 ORTHO05D004560 1.5e-09 70.9 131 33.6
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.6e-08 67.4 165 31.5
SEGI_13878 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 9.9e-06 58.2 159 28.9


User provided reference genes

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