Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 3.4e-135 485.0 239 100.0
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 3.0e-115 418.7 240 84.6
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 3.9e-115 418.3 240 85.4
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 1.1e-114 416.8 239 85.4
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.1e-114 416.8 240 85.0
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 3.3e-114 415.2 239 85.4
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 2.0e-90 336.3 250 69.6
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 2.4e-88 329.3 247 69.2
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 9.8e-82 307.4 247 67.6
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 2.2e-81 306.2 245 66.5
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 4.1e-80 302.0 246 65.4
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 4.1e-80 302.0 229 66.8
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 5.4e-80 301.6 214 71.5
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 7.0e-80 301.2 242 67.8
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 3.8e-78 295.4 246 65.0
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 8.6e-78 294.3 213 69.5
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.5e-77 293.5 243 67.1
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 3.6e-76 288.9 241 64.7
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 4.7e-76 288.5 242 62.0
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 6.1e-76 288.1 245 62.0
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 8.0e-76 287.7 221 69.2
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 3.0e-75 285.8 241 62.7
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 6.8e-75 284.6 252 64.3
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 6.8e-75 284.6 237 63.3
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 2.0e-74 283.1 241 63.5
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.6e-74 282.7 160 85.0
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.6e-74 282.7 160 85.0
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 9.8e-74 280.8 241 62.7
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 1.3e-73 280.4 244 62.3
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 3.7e-73 278.9 171 79.5
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 4.9e-73 278.5 230 64.3
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 8.3e-73 277.7 243 63.4
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 8.3e-73 277.7 294 56.1
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 8.3e-73 277.7 237 65.0
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 1.1e-72 277.3 159 84.3
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 1.4e-72 276.9 240 62.9
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 1.8e-72 276.6 167 79.6
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 3.2e-72 275.8 235 65.1
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 9.2e-72 274.2 167 78.4
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 9.2e-72 274.2 236 63.1
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.2e-71 273.9 194 70.1
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 2.0e-71 273.1 171 77.8
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.5e-71 272.3 171 76.6
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 3.5e-71 272.3 253 59.7
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 6.0e-71 271.6 171 76.0
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 6.0e-71 271.6 171 76.0
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 7.8e-71 271.2 223 66.4
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 1.0e-70 270.8 171 77.2
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 1.7e-70 270.0 157 82.8
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 2.3e-70 269.6 156 84.0
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 3.0e-70 269.2 237 59.5
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 3.0e-70 269.2 174 77.6
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 3.9e-70 268.9 155 84.5
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 5.0e-70 268.5 238 59.7
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 5.0e-70 268.5 240 60.4
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 6.6e-70 268.1 272 56.6
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 6.6e-70 268.1 237 59.1
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.1e-69 267.3 193 69.4
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 1.5e-69 266.9 163 79.1
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 1.9e-69 266.5 159 79.9
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 7.3e-69 264.6 170 78.8
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 9.5e-69 264.2 171 74.3
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 3.6e-68 262.3 156 80.1
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 3.6e-68 262.3 157 79.0
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 6.2e-68 261.5 209 65.1
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 8.0e-68 261.2 171 74.9
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 8.0e-68 261.2 161 77.6
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 1.4e-67 260.4 171 72.5
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 1.8e-67 260.0 171 72.5
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 2.3e-67 259.6 171 71.9
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 2.3e-67 259.6 155 79.4
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 8.9e-67 257.7 157 76.4
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 2.0e-66 256.5 156 82.1
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 3.4e-66 255.8 157 77.7
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 4.4e-66 255.4 209 62.2
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 5.8e-66 255.0 187 69.0
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.5e-66 254.6 155 78.7
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 9.8e-66 254.2 275 54.2
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.7e-65 253.4 149 80.5
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 1.7e-65 253.4 157 77.1
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 1.7e-65 253.4 160 76.2
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 2.2e-65 253.1 155 76.1
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 2.2e-65 253.1 155 76.1
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 2.2e-65 253.1 155 78.7
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 2.9e-65 252.7 160 76.2
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 6.4e-65 251.5 154 77.9
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 8.3e-65 251.1 176 70.5
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 1.9e-64 250.0 157 75.2
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 2.4e-64 249.6 170 69.4
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 7.0e-64 248.1 155 78.1
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 3.5e-63 245.7 196 62.8
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 1.7e-62 243.4 150 78.0
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 3.0e-62 242.7 175 69.1
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 1.1e-61 240.7 156 71.2
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 1.5e-61 240.4 191 66.5
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 7.3e-61 238.0 293 48.1
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 6.2e-60 235.0 196 63.8
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 3.1e-59 232.6 151 72.8
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 1.2e-58 230.7 154 72.1
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 2.0e-58 229.9 154 71.4
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 7.5e-58 228.0 153 73.2
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 3.7e-57 225.7 174 65.5
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 4.9e-57 225.3 144 74.3
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 2.4e-56 223.0 154 72.1
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 4.6e-55 218.8 162 65.4
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 5.6e-53 211.8 151 66.9
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 1.8e-51 206.8 152 70.4
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 6.8e-51 204.9 206 50.5
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 8.9e-51 204.5 123 80.5
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 1.7e-46 190.3 144 58.3
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 8.7e-46 188.0 144 69.4
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 4.3e-45 185.7 157 61.8
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 9.3e-40 167.9 150 54.7
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.0e-38 162.9 87 87.4
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 4.3e-37 159.1 138 61.6
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 4.3e-37 159.1 138 61.6
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 6.2e-28 128.6 85 76.5
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 1.1e-27 127.9 131 52.7
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 1.5e-26 124.0 117 45.3
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 2.7e-23 113.2 136 47.1
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 6.7e-22 108.6 119 43.7
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 1.1e-21 107.8 116 43.1
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 6.2e-20 102.1 132 37.9
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 1.8e-19 100.5 122 49.2
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 1.3e-14 84.3 97 50.5
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 4.5e-10 69.3 86 46.5
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 1.0e-09 68.2 38 76.3
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.9e-08 63.9 43 67.4
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 5.1e-06 55.8 94 38.3
Actinidia08088 Actinidia chinensis HOM05D006725 ORTHO05D008223 8.8e-06 55.1 103 32.0
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 8.8e-06 55.1 132 30.3


User provided reference genes

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