Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.07G044200 Theobroma cacao HOM05D006818 ORTHO05D008674 4.9e-191 671.0 345 100.0
Duzib213G0630 Durio zibethinus HOM05D006818 ORTHO05D008674 1.1e-169 600.1 342 86.3
COL.COLO4_09629 Corchorus olitorius HOM05D006818 ORTHO05D008674 5.4e-166 587.8 346 83.8
Gohir.A01G077200 Gossypium hirsutum HOM05D006818 ORTHO05D008674 1.6e-165 586.3 342 85.7
Gohir.D01G064700 Gossypium hirsutum HOM05D006818 ORTHO05D008674 6.6e-164 580.9 342 85.1
Gorai.002G085600 Gossypium raimondii HOM05D006818 ORTHO05D008674 9.6e-163 577.0 342 84.8
Manes.15G074101 Manihot esculenta HOM05D006818 ORTHO05D008674 1.7e-156 556.2 344 79.1
Dinv22282 Davidia involucrata HOM05D006818 ORTHO05D008674 4.8e-154 548.1 314 83.1
Ciclev10008835m.g Citrus clementina HOM05D006818 ORTHO05D008674 2.0e-152 542.7 340 78.2
QL08p011921 Quercus lobata HOM05D006818 ORTHO05D008674 2.9e-151 538.9 313 82.4
QL08p012092 Quercus lobata HOM05D006818 ORTHO05D008674 1.4e-150 536.6 313 82.7
GSVIVG01001999001 Vitis vinifera HOM05D006818 ORTHO05D008674 5.4e-150 534.6 314 81.8
ClCG05G014460 Citrullus lanatus HOM05D006818 ORTHO05D008674 1.9e-147 526.2 312 79.8
Cpa.g.sc97.37 Carica papaya HOM05D006818 ORTHO05D008674 4.8e-146 521.5 314 79.3
TWI39G0401 Tripterygium wilfordii HOM05D006818 ORTHO05D008674 4.8e-146 521.5 348 73.6
CiPaw.11G186900 Carya illinoinensis HOM05D006818 ORTHO05D008674 1.1e-145 520.4 313 79.6
Potri.001G420800 Populus trichocarpa HOM05D006818 ORTHO05D008674 5.3e-145 518.1 348 74.1
CANSAT25G1970 Cannabis sativa HOM05D006818 ORTHO05D008674 9.0e-145 517.3 307 80.1
CSS0009238 Camellia sinensis var. sinensis HOM05D006818 ORTHO05D008674 1.5e-144 516.5 314 79.3
MELO3C018077.2 Cucumis melo HOM05D006818 ORTHO05D008674 2.6e-144 515.8 312 78.8
Haze_09645 Corylus avellana HOM05D006818 ORTHO05D008674 7.6e-144 514.2 313 78.9
Nitab4.5_0000749g0100 Nicotiana tabacum HOM05D006818 ORTHO05D008674 7.6e-144 514.2 312 78.5
Nitab4.5_0000653g0090 Nicotiana tabacum HOM05D006818 ORTHO05D008674 1.3e-143 513.5 313 78.3
Phvul.008G265400 Phaseolus vulgaris HOM05D006818 ORTHO05D008674 1.7e-143 513.1 313 78.6
Eucgr.F03445 Eucalyptus grandis HOM05D006818 ORTHO05D008674 2.9e-143 512.3 314 77.1
CsaV3_3G023260 Cucumis sativus L. HOM05D006818 ORTHO05D008674 3.8e-143 511.9 312 78.5
Glyma.02G289400 Glycine max HOM05D006818 ORTHO05D008674 3.8e-143 511.9 312 79.8
Ca_06305_v3 Cicer arietinum L. HOM05D006818 ORTHO05D008674 2.4e-142 509.2 312 79.5
TAR627G0163 Trochodendron aralioides HOM05D006818 ORTHO05D008674 2.4e-142 509.2 315 78.1
Glyma.14G025600 Glycine max HOM05D006818 ORTHO05D008674 4.2e-142 508.4 312 78.8
Rhsim06G0214800 Rhododendron simsii HOM05D006818 ORTHO05D008674 6.0e-141 504.6 316 75.9
Nn1g07100 Nelumbo nucifera HOM05D006818 ORTHO05D008674 7.9e-141 504.2 313 78.9
Sed0006226 Sechium edule HOM05D006818 ORTHO05D008674 7.9e-141 504.2 312 77.2
VMungo0647G1753 Vigna mungo HOM05D006818 ORTHO05D008674 7.9e-141 504.2 313 78.3
Peaxi162Scf01097g00023 Petunia axillaris HOM05D006818 ORTHO05D008674 1.0e-140 503.8 312 76.9
Sopen12g001170 Solanum pennellii HOM05D006818 ORTHO05D008674 1.0e-140 503.8 313 75.7
Solyc12g005180.2 Solanum lycopersicum HOM05D006818 ORTHO05D008674 1.3e-140 503.4 313 75.4
Cc05_g13490 Coffea canephora HOM05D006818 ORTHO05D008674 1.8e-140 503.1 313 76.4
CAN.G315.6 Capsicum annuum HOM05D006818 ORTHO05D008674 3.0e-140 502.3 312 76.9
Lj8A167T47 Lonicera japonica HOM05D006818 ORTHO05D008674 3.9e-140 501.9 314 77.7
LjContig00308g0005180 Lotus japonicus HOM05D006818 ORTHO05D008674 8.7e-140 500.7 314 77.7
Atru.chr2.3275 Acer truncatum HOM05D006818 ORTHO05D008674 1.5e-139 500.0 316 76.9
Sabra16G0285700 Salix brachista HOM05D006818 ORTHO05D008674 1.5e-139 500.0 366 69.9
Lalb_Chr04g0248591 Lupinus albus HOM05D006818 ORTHO05D008674 2.5e-139 499.2 315 77.8
Ah.06g195870 Amaranthus hybridus HOM05D006818 ORTHO05D008674 7.4e-139 497.7 316 75.6
Oeu005459.1 Olea europaea HOM05D006818 ORTHO05D008674 8.1e-138 494.2 312 77.6
PGR031G1507 Punica granatum HOM05D006818 ORTHO05D008674 8.1e-138 494.2 315 74.3
Sc06g0005170 Simmondsia chinensis HOM05D006818 ORTHO05D008674 1.4e-137 493.4 314 75.5
MD11G1222300 Malus domestica HOM05D006818 ORTHO05D008674 6.9e-137 491.1 312 74.4
Prupe.4G208600 Prunus persica HOM05D006818 ORTHO05D008674 1.3e-135 486.9 312 74.4
Medtr5g092080 Medicago truncatula HOM05D006818 ORTHO05D008674 1.7e-135 486.5 313 75.1
MBI18_g06645_MAGBIO Magnolia biondii HOM05D006818 ORTHO05D008674 2.2e-135 486.1 311 76.5
MSTRG.6906 Avicennia marina HOM05D006818 ORTHO05D008674 4.9e-135 485.0 313 76.0
EL10Ac4g09438 Beta vulgaris HOM05D006818 ORTHO05D008674 6.5e-135 484.6 332 71.1
RcHm_v2.0_Chr5g0037981 Rosa chinensis HOM05D006818 ORTHO05D008674 1.9e-134 483.0 312 73.1
Aqoxy1G03627 Aquilegia oxysepala HOM05D006818 ORTHO05D008674 2.5e-134 482.6 310 75.5
Hund07318 Selenicereus undatus HOM05D006818 ORTHO05D008674 4.2e-134 481.9 317 73.5
FvH4_3g22121 Fragaria vesca HOM05D006818 ORTHO05D008674 1.6e-133 479.9 312 72.8
Psat2g015280 Pisum sativum HOM05D006818 ORTHO05D008674 3.5e-133 478.8 316 75.3
DCAR_022551 Daucus carota HOM05D006818 ORTHO05D008674 9.6e-131 470.7 316 73.4
Lsat_1_v5_gn_7_109080 Lactuca sativa HOM05D006818 ORTHO05D008674 1.6e-130 469.9 312 74.7
PGSC0003DMG400001099 Solanum tuberosum HOM05D006818 ORTHO05D008674 6.3e-130 468.0 268 81.7
arahy.Tifrunner.gnm1.ann1.37S2BM Arachis hypogaea HOM05D006818 ORTHO05D008674 1.1e-129 467.2 307 76.5
arahy.Tifrunner.gnm1.ann1.D1ZW30 Arachis hypogaea HOM05D006818 ORTHO05D008674 1.8e-129 466.5 307 76.5
ATR0752G046 Amborella trichopoda HOM05D006818 ORTHO05D008674 1.2e-128 463.8 272 79.4
CDE01G0156 Ceratophyllum demersum HOM05D006818 ORTHO05D008674 4.5e-128 461.8 304 71.7
Migut.M01786 Erythranthe guttata HOM05D006818 ORTHO05D008674 4.5e-128 461.8 311 73.3
A06p27360 Brassica napus HOM05D006818 ORTHO05D008674 5.9e-128 461.5 306 74.5
BraA06t25672Z Brassica rapa HOM05D006818 ORTHO05D008674 5.9e-128 461.5 306 74.5
BcaB02g10686 Brassica carinata HOM05D006818 ORTHO05D008674 2.9e-127 459.1 317 72.2
ECA236G4406 Erigeron canadensis HOM05D006818 ORTHO05D008674 2.9e-127 459.1 314 72.0
Carub.0005s1401 Capsella rubella HOM05D006818 ORTHO05D008674 1.9e-126 456.4 307 73.3
BcaC01g02294 Brassica carinata HOM05D006818 ORTHO05D008674 2.5e-126 456.1 306 73.5
C03p66930 Brassica napus HOM05D006818 ORTHO05D008674 2.5e-126 456.1 306 73.5
BolC3t18966H Brassica oleracea HOM05D006818 ORTHO05D008674 3.2e-126 455.7 306 73.5
SpUn0103_0020 Schrenkiella parvula HOM05D006818 ORTHO05D008674 4.2e-126 455.3 314 72.0
FAN11G0521 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.1e-125 453.0 280 76.4
QL08p012107 Quercus lobata HOM05D006818 ORTHO05D008674 4.6e-125 451.8 246 86.2
SGA_v2.0_scaffold80G25946 Striga asiatica HOM05D006818 ORTHO05D008674 7.9e-125 451.1 314 70.7
Zm00001eb070100 Zea mays HOM05D006818 ORTHO05D008674 3.9e-124 448.7 313 69.3
FAN16G0093 Fragaria x ananassa HOM05D006818 ORTHO05D008674 6.7e-124 448.0 285 74.7
Thhalv10010497m.g Eutrema salsugineum HOM05D006818 ORTHO05D008674 8.7e-124 447.6 313 70.6
PSO210G7832 Papaver somniferum HOM05D006818 ORTHO05D008674 3.3e-123 445.7 309 72.5
HanXRQChr15g0494291 Helianthus annuus HOM05D006818 ORTHO05D008674 1.6e-122 443.4 301 72.8
Os04g0626400 Oryza sativa ssp. japonica HOM05D006818 ORTHO05D008674 2.8e-122 442.6 314 70.1
AL5G27200 Arabidopsis lyrata HOM05D006818 ORTHO05D008674 6.3e-122 441.4 317 69.1
PSO832G0412 Papaver somniferum HOM05D006818 ORTHO05D008674 8.2e-122 441.0 302 72.5
Actinidia05109 Actinidia chinensis HOM05D006818 ORTHO05D008674 1.1e-121 440.7 313 70.0
AT3G47860 Arabidopsis thaliana HOM05D006818 ORTHO05D008674 1.3e-119 433.7 308 70.8
Atru.BG.12.p Acer truncatum HOM05D006818 ORTHO05D008674 5.0e-119 431.8 232 88.4
unitig_62.g23277 Utricularia gibba HOM05D006818 ORTHO05D008674 1.4e-118 430.3 314 67.8
Aa31LG4G16540 Aethionema arabicum HOM05D006818 ORTHO05D008674 1.2e-117 427.2 318 67.0
vmacro11742 Vaccinium macrocarpon HOM05D006818 ORTHO05D008674 6.1e-117 424.9 318 67.9
FAN25G3657 Fragaria x ananassa HOM05D006818 ORTHO05D008674 2.3e-116 422.9 271 73.4
HPP92_009349 Vanilla planifolia HOM05D006818 ORTHO05D008674 1.3e-111 407.1 232 81.5
AUR62006731 Chenopodium quinoa HOM05D006818 ORTHO05D008674 5.0e-111 405.2 217 87.1
Sp5g14080 Schrenkiella parvula HOM05D006818 ORTHO05D008674 3.0e-108 396.0 272 72.1
MD03G1208100 Malus domestica HOM05D006818 ORTHO05D008674 4.8e-106 388.7 308 63.3
AUR62000376 Chenopodium quinoa HOM05D006818 ORTHO05D008674 8.5e-103 377.9 313 62.0
Mapoly0115s0028 Marchantia polymorpha HOM05D006818 ORTHO05D008674 1.4e-92 344.0 301 57.8
SMO147G0254 Selaginella moellendorffii HOM05D006818 ORTHO05D008674 1.8e-92 343.6 233 69.1
Hma1.2p1_1271F.1_g271840 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 2.2e-90 336.7 183 87.4
Hma1.2p1_1609F.1_g293429 Hydrangea macrophylla HOM05D006818 ORTHO05D008674 2.2e-90 336.7 183 87.4
Pp3c9_6110 Physcomitrium patens HOM05D006818 ORTHO05D008674 4.2e-86 322.4 306 51.3
TPR.G12727 Trifolium pratense HOM05D006818 ORTHO05D008674 2.8e-85 319.7 216 71.8
TPR.G29121 Trifolium pratense HOM05D006818 ORTHO05D008674 1.5e-78 297.4 197 73.6
SEGI_29406 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 4.1e-73 279.3 216 61.1
AagrBONN_evm.TU.Sc2ySwM_228.3024 Anthoceros agrestis HOM05D006818 ORTHO05D008674 2.5e-70 270.0 189 66.1
TPR.G29124 Trifolium pratense HOM05D006818 ORTHO05D008674 7.8e-64 248.4 150 79.3
CBR_g57971 Chara braunii HOM05D006818 ORTHO05D008674 2.3e-60 236.9 201 59.2
PRCOL_00005879 Prasinoderma coloniale HOM05D006818 ORTHO05D008674 4.9e-42 176.0 167 50.3
RcHm_v2.0_Chr3g0496801 Rosa chinensis HOM05D006818 ORTHO05D008674 8.1e-37 158.7 122 59.0
Glyma.14G153300 Glycine max HOM05D006818 ORTHO05D008674 2.2e-34 150.6 78 88.5
Ah.06g195920 Amaranthus hybridus HOM05D001023 ORTHO05D000912 1.3e-29 134.8 121 56.2
Actinidia09914 Actinidia chinensis HOM05D006818 ORTHO05D008674 1.4e-20 104.8 59 81.4
SEGI_26249 Sequoiadendron giganteum HOM05D006818 ORTHO05D008674 1.7e-10 71.2 52 67.3
MD02G1010500 Malus domestica HOM05D003204 ORTHO05D003566 3.6e-08 63.5 167 29.9
Sp6g19740 Schrenkiella parvula HOM05D003204 ORTHO05D003566 4.6e-08 63.2 167 31.7
C02p13650 Brassica napus HOM05D003204 ORTHO05D003566 7.9e-08 62.4 173 31.8
BcaC03g14125 Brassica carinata HOM05D003204 ORTHO05D003566 1.0e-07 62.0 167 31.7
BolC2t07477H Brassica oleracea HOM05D003204 ORTHO05D003566 1.0e-07 62.0 167 31.7
Sed0001393 Sechium edule HOM05D006818 ORTHO05D372820 1.4e-07 61.6 254 28.3
BcaB08g36152 Brassica carinata HOM05D003204 ORTHO05D003566 1.8e-07 61.2 170 29.4
A02p07990 Brassica napus HOM05D003204 ORTHO05D003566 3.0e-07 60.5 167 31.1
BraA02t05872Z Brassica rapa HOM05D003204 ORTHO05D003566 3.0e-07 60.5 167 31.1
C02p13620 Brassica napus HOM05D003204 ORTHO05D003566 3.9e-07 60.1 167 31.1
BcaB01g04554 Brassica carinata HOM05D003204 ORTHO05D003566 5.1e-07 59.7 170 30.0
C03p14580 Brassica napus HOM05D003204 ORTHO05D003566 5.1e-07 59.7 170 30.0
BolC3t13899H Brassica oleracea HOM05D003204 ORTHO05D003566 5.1e-07 59.7 170 30.0
Mapoly0161s0027 Marchantia polymorpha HOM05D003204 ORTHO05D003566 8.8e-07 58.9 173 27.7
Atru.chr7.159 Acer truncatum HOM05D003204 ORTHO05D003566 1.1e-06 58.5 167 29.3
Lalb_Chr07g0179701 Lupinus albus HOM05D003204 ORTHO05D003566 1.1e-06 58.5 167 29.9
A03p12410 Brassica napus HOM05D003204 ORTHO05D003566 1.5e-06 58.2 170 29.4
BraA03t10555Z Brassica rapa HOM05D003204 ORTHO05D003566 1.5e-06 58.2 170 29.4
Manes.06G038651 Manihot esculenta HOM05D003204 ORTHO05D003566 1.5e-06 58.2 167 28.7
BcaC03g14124 Brassica carinata HOM05D003204 ORTHO05D003566 1.9e-06 57.8 167 30.5
BolC2t07474H Brassica oleracea HOM05D003204 ORTHO05D003566 1.9e-06 57.8 167 30.5
Aa31LG3G13910 Aethionema arabicum HOM05D003204 ORTHO05D003566 2.5e-06 57.4 170 28.8
AL8G34170 Arabidopsis lyrata HOM05D003204 ORTHO05D003566 3.3e-06 57.0 167 29.9
Eucgr.C00377 Eucalyptus grandis HOM05D003204 ORTHO05D003566 3.3e-06 57.0 167 29.9
Solyc12g010320.2 Solanum lycopersicum HOM05D003204 ORTHO05D003566 3.3e-06 57.0 171 28.7
Sopen12g005200 Solanum pennellii HOM05D003204 ORTHO05D003566 3.3e-06 57.0 171 28.7
FvH4_1g01260 Fragaria vesca HOM05D003204 ORTHO05D003566 4.3e-06 56.6 170 28.2
Lalb_Chr13g0301021 Lupinus albus HOM05D003204 ORTHO05D003566 4.3e-06 56.6 167 29.9
VMungo1309G2170 Vigna mungo HOM05D003204 ORTHO05D003566 5.7e-06 56.2 167 29.3
Ca_21107_v3 Cicer arietinum L. HOM05D003204 ORTHO05D003566 7.4e-06 55.8 170 25.9
Migut.K00344 Erythranthe guttata HOM05D003204 ORTHO05D003566 7.4e-06 55.8 167 29.9


User provided reference genes

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