Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1459.5 712 100.0
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1343.2 712 90.7
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1336.6 712 91.9
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1323.9 712 90.2
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1320.4 712 90.0
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1319.7 712 90.0
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1223.0 712 82.7
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1201.0 712 80.6
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1199.1 712 80.9
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1195.3 708 81.1
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1189.9 712 80.3
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1188.7 713 80.9
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1187.9 711 81.4
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 0.0e+00 1186.8 712 80.1
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1176.0 714 79.0
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1173.7 712 78.1
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 0.0e+00 1171.8 712 79.6
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 0.0e+00 1164.8 714 78.2
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 0.0e+00 1163.7 698 79.9
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1153.7 712 77.9
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1153.3 712 78.5
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1152.9 712 77.7
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 0.0e+00 1145.2 715 78.6
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1142.9 715 78.3
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 0.0e+00 1132.5 716 75.6
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1131.3 717 77.8
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1129.8 708 77.3
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 0.0e+00 1128.2 715 75.4
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 0.0e+00 1127.1 716 75.1
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 0.0e+00 1126.3 705 77.2
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 0.0e+00 1126.3 710 75.1
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 0.0e+00 1123.6 704 76.8
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 0.0e+00 1122.5 714 76.3
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1119.4 712 75.8
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 0.0e+00 1119.4 710 76.2
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 0.0e+00 1116.3 799 70.2
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 0.0e+00 1115.9 710 76.3
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 0.0e+00 1114.8 706 76.2
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 0.0e+00 1112.8 713 75.6
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 0.0e+00 1112.8 702 76.6
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 0.0e+00 1111.7 714 74.8
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 0.0e+00 1110.9 707 76.1
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 0.0e+00 1109.7 712 74.6
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 0.0e+00 1108.6 712 75.0
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 0.0e+00 1104.4 714 75.5
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 0.0e+00 1102.8 708 76.3
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 0.0e+00 1100.5 698 76.1
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 0.0e+00 1099.7 704 76.1
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 0.0e+00 1095.5 712 73.6
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 0.0e+00 1094.3 707 72.7
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 0.0e+00 1093.2 704 75.4
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 0.0e+00 1093.2 730 73.4
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 0.0e+00 1092.8 704 75.3
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 0.0e+00 1091.3 713 74.5
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 0.0e+00 1089.7 713 73.9
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 0.0e+00 1088.6 748 71.7
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 0.0e+00 1083.9 717 75.0
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 0.0e+00 1082.0 707 73.8
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 0.0e+00 1079.3 718 73.0
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 0.0e+00 1078.9 728 73.4
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 0.0e+00 1078.2 717 74.8
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 0.0e+00 1075.1 736 71.5
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 7.3e-311 1070.1 705 73.6
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 1.7e-310 1068.9 708 73.0
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 5.3e-309 1063.9 711 72.7
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.5e-306 1055.0 669 75.5
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 3.9e-304 1047.7 708 70.8
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 5.2e-304 1047.3 703 71.6
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 4.8e-302 1040.8 712 71.8
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 1.8e-301 1038.9 694 71.8
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 7.0e-301 1036.9 711 71.0
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 3.5e-300 1034.6 706 71.1
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 4.5e-300 1034.2 706 71.0
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 1.7e-299 1032.3 706 71.4
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 1.5e-298 1029.2 709 70.2
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 2.1e-297 1025.4 712 70.2
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 1.4e-296 1022.7 707 71.0
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 1.8e-296 1022.3 712 69.4
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 3.0e-296 1021.5 711 69.9
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.2e-294 1015.4 691 71.1
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 4.1e-293 1011.1 707 70.7
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 2.2e-291 1005.4 711 69.1
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 3.6e-289 998.0 784 62.9
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 2.2e-286 988.8 587 80.9
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 4.8e-286 987.6 710 67.9
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 2.3e-283 978.8 704 70.5
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 1.5e-282 976.1 755 64.0
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 4.2e-282 974.5 710 67.3
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 4.7e-281 971.1 697 67.9
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 9.5e-274 946.8 562 79.5
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.6e-273 946.0 717 65.8
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 7.5e-271 937.2 603 74.6
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 7.0e-269 930.6 679 67.5
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 3.0e-267 925.2 713 65.5
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 4.6e-260 901.4 548 80.1
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 3.4e-255 885.2 705 63.5
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 4.1e-253 878.2 712 61.4
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 6.6e-243 844.3 526 77.4
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 4.2e-213 745.3 742 55.5
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 5.5e-213 745.0 694 53.6
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 7.4e-210 734.6 708 53.2
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 8.5e-190 667.9 694 50.9
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 5.2e-187 658.7 875 43.3
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.4e-184 650.6 444 70.3
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 6.5e-182 641.7 390 77.7
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 8.5e-174 614.8 838 42.5
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 9.8e-170 601.3 686 47.8
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 2.3e-163 580.1 495 57.6
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 4.0e-147 526.2 753 42.0
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 5.6e-141 505.8 741 41.6
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 4.9e-129 466.1 742 38.9
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 8.4e-129 465.3 811 36.9
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 2.1e-127 460.7 702 38.3
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 3.5e-127 459.9 334 71.0
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.6e-116 424.5 303 70.6
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 2.7e-111 407.1 355 59.2
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 1.7e-81 308.1 266 59.4
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.1e-77 295.4 201 70.6
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 1.0e-65 255.8 197 64.5
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 6.3e-60 236.5 164 68.3
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 1.9e-56 224.9 134 80.6
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 1.1e-40 172.6 114 71.1
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 3.4e-37 161.0 102 76.5
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 6.4e-36 156.8 174 55.2
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 8.6e-33 146.4 117 58.1
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.1e-32 146.0 100 73.0
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 2.1e-31 141.7 83 72.3
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 7.3e-24 116.7 61 86.9
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.1e-22 112.8 148 43.9
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 7.8e-18 96.7 62 71.0
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 4.7e-15 87.4 59 67.8
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 2.0e-13 82.0 62 61.3
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 5.8e-13 80.5 45 84.4
SHI28556 Sapria himalayana HOM05D005873 ORTHO05D007582 7.1e-11 73.6 51 60.8
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 2.3e-09 68.6 47 59.6
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 1.5e-08 65.9 60 58.3


User provided reference genes

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