Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G096500 Theobroma cacao HOM05D001730 ORTHO05D023306 2.6e-81 305.4 169 100.0
Thecc.04G086600 Theobroma cacao HOM05D001730 ORTHO05D004519 3.4e-44 182.2 144 70.8
Gorai.012G052100 Gossypium raimondii HOM05D001730 ORTHO05D004519 6.8e-37 157.9 147 62.6
Gohir.D04G046900 Gossypium hirsutum HOM05D001730 ORTHO05D004519 5.7e-36 154.8 147 61.2
Gohir.A05G368400 Gossypium hirsutum HOM05D001730 ORTHO05D004519 9.8e-36 154.1 147 60.5
COL.COLO4_10343 Corchorus olitorius HOM05D001730 ORTHO05D004519 1.3e-35 153.7 149 62.4
Duzib187G1340 Durio zibethinus HOM05D001730 ORTHO05D004519 1.6e-33 146.7 149 60.4
Gorai.001G240000 Gossypium raimondii HOM05D001730 ORTHO05D004519 3.5e-33 145.6 145 60.0
Gohir.D07G212300 Gossypium hirsutum HOM05D001730 ORTHO05D004519 3.9e-32 142.1 146 60.3
Gorai.001G240300 Gossypium raimondii HOM05D001730 ORTHO05D004519 2.5e-31 139.4 146 59.6
Gohir.A07G206200 Gossypium hirsutum HOM05D001730 ORTHO05D004519 2.1e-30 136.3 148 58.1
Duzib147G0211 Durio zibethinus HOM05D001730 ORTHO05D004519 2.3e-29 132.9 158 54.4
TAR622G1345 Trochodendron aralioides HOM05D001730 ORTHO05D004519 3.9e-24 115.5 125 59.2
TAR365G0180 Trochodendron aralioides HOM05D001730 ORTHO05D004519 2.8e-22 109.4 130 55.4
Actinidia26229 Actinidia chinensis HOM05D001730 ORTHO05D004519 3.6e-22 109.0 136 53.7
Nitab4.5_0000568g0140 Nicotiana tabacum HOM05D001730 ORTHO05D004519 3.6e-22 109.0 141 51.8
Manes.01G093400 Manihot esculenta HOM05D001730 ORTHO05D004519 2.3e-21 106.3 145 49.7
MD09G1054200 Malus domestica HOM05D001730 ORTHO05D004519 3.1e-21 105.9 153 48.4
CSS0001636 Camellia sinensis var. sinensis HOM05D001730 ORTHO05D004519 4.0e-21 105.5 143 51.0
CSS0022883 Camellia sinensis var. sinensis HOM05D001730 ORTHO05D004519 4.0e-21 105.5 143 51.0
Lalb_Chr02g0159171 Lupinus albus HOM05D001730 ORTHO05D004519 5.2e-21 105.1 136 55.1
Nn3g17310 Nelumbo nucifera HOM05D001730 ORTHO05D004519 5.2e-21 105.1 124 57.3
CARHR075930 Cardamine hirsuta HOM05D001730 ORTHO05D004519 2.0e-20 103.2 164 44.5
Aqoxy3G03468 Aquilegia oxysepala HOM05D001730 ORTHO05D004519 3.4e-20 102.4 143 50.3
PGR004G0017 Punica granatum HOM05D001730 ORTHO05D004519 3.4e-20 102.4 150 46.0
Dinv11510 Davidia involucrata HOM05D001730 ORTHO05D004519 5.8e-20 101.7 137 50.4
Solyc02g067180.3 Solanum lycopersicum HOM05D001730 ORTHO05D004519 5.8e-20 101.7 131 49.6
Lj3C1034G14 Lonicera japonica HOM05D001730 ORTHO05D004519 7.5e-20 101.3 147 46.9
FAN14G4386 Fragaria x ananassa HOM05D001730 ORTHO05D004519 9.8e-20 100.9 146 47.9
FvH4_6g48090 Fragaria vesca HOM05D001730 ORTHO05D004519 1.3e-19 100.5 146 47.9
Peaxi162Scf00629g00115 Petunia axillaris HOM05D001730 ORTHO05D004519 1.3e-19 100.5 126 51.6
Manes.02G048100 Manihot esculenta HOM05D001730 ORTHO05D004519 1.7e-19 100.1 156 42.9
Dinv33778 Davidia involucrata HOM05D001730 ORTHO05D004519 2.2e-19 99.8 138 51.4
FAN02G1975 Fragaria x ananassa HOM05D001730 ORTHO05D004519 2.2e-19 99.8 146 47.9
FAN05G3129 Fragaria x ananassa HOM05D001730 ORTHO05D004519 2.2e-19 99.8 146 47.9
Nitab4.5_0001591g0250 Nicotiana tabacum HOM05D001730 ORTHO05D004519 2.2e-19 99.8 155 44.5
CAN.G979.1 Capsicum annuum HOM05D001730 ORTHO05D004519 2.9e-19 99.4 134 50.0
Nitab4.5_0003975g0010 Nicotiana tabacum HOM05D001730 ORTHO05D004519 2.9e-19 99.4 132 48.5
THA.LOC104821018 Tarenaya hassleriana HOM05D001730 ORTHO05D004519 2.9e-19 99.4 154 45.5
Glyma.09G235400 Glycine max HOM05D001730 ORTHO05D004519 3.7e-19 99.0 149 48.3
Actinidia26230 Actinidia chinensis HOM05D001730 ORTHO05D004519 6.4e-19 98.2 135 49.6
Ah.10g031760 Amaranthus hybridus HOM05D001730 ORTHO05D004519 6.4e-19 98.2 130 51.5
Sopen02g016340 Solanum pennellii HOM05D001730 ORTHO05D004519 6.4e-19 98.2 131 48.9
VMungo1383G2111 Vigna mungo HOM05D001730 ORTHO05D004519 8.3e-19 97.8 153 47.1
FAN09G3279 Fragaria x ananassa HOM05D001730 ORTHO05D004519 1.1e-18 97.4 145 49.7
Rhsim08G0071000 Rhododendron simsii HOM05D001730 ORTHO05D004519 1.1e-18 97.4 125 47.2
Oeu000840.3 Olea europaea HOM05D001730 ORTHO05D004519 1.4e-18 97.1 132 48.5
TWI60G1242 Tripterygium wilfordii HOM05D001730 ORTHO05D004519 1.4e-18 97.1 157 47.1
MBI05_g05246_MAGBIO Magnolia biondii HOM05D001730 ORTHO05D004519 1.9e-18 96.7 141 48.9
Atru.chr8.312 Acer truncatum HOM05D001730 ORTHO05D004519 2.4e-18 96.3 154 47.4
MSTRG.3335 Avicennia marina HOM05D001730 ORTHO05D004519 2.4e-18 96.3 138 47.8
Phvul.008G038100 Phaseolus vulgaris HOM05D001730 ORTHO05D004519 2.4e-18 96.3 142 48.6
Prupe.3G264300 Prunus persica HOM05D001730 ORTHO05D004519 2.4e-18 96.3 128 50.8
arahy.Tifrunner.gnm1.ann1.I2BVW6 Arachis hypogaea HOM05D001730 ORTHO05D004519 4.1e-18 95.5 149 45.0
Thhalv10020394m.g Eutrema salsugineum HOM05D001730 ORTHO05D004519 4.1e-18 95.5 172 43.0
PSO832G3607 Papaver somniferum HOM05D001730 ORTHO05D004519 4.1e-18 95.5 153 48.4
Actinidia17559 Actinidia chinensis HOM05D001730 ORTHO05D023306 5.4e-18 95.1 130 50.8
arahy.Tifrunner.gnm1.ann1.0JH0K6 Arachis hypogaea HOM05D001730 ORTHO05D004519 7.0e-18 94.7 149 44.3
Cpa.g.c28082.1 Carica papaya HOM05D001730 ORTHO05D004519 7.0e-18 94.7 135 46.7
PGSC0003DMG400008477 Solanum tuberosum HOM05D001730 ORTHO05D004519 7.0e-18 94.7 153 45.1
Sp3g01000 Schrenkiella parvula HOM05D001730 ORTHO05D004519 9.2e-18 94.4 168 41.7
A05p44840 Brassica napus HOM05D001730 ORTHO05D004519 1.2e-17 94.0 155 43.9
BraA05t23173Z Brassica rapa HOM05D001730 ORTHO05D004519 1.2e-17 94.0 155 43.9
HanXRQChr09g0262661 Helianthus annuus HOM05D001730 ORTHO05D004519 1.2e-17 94.0 129 50.4
Lsat_1_v5_gn_4_169480 Lactuca sativa HOM05D001730 ORTHO05D004519 1.2e-17 94.0 132 48.5
Hma1.2p1_0409F.1_g146780 Hydrangea macrophylla HOM05D001730 ORTHO05D004519 1.6e-17 93.6 140 48.6
arahy.Tifrunner.gnm1.ann1.AGM2GS Arachis hypogaea HOM05D001730 ORTHO05D004519 2.1e-17 93.2 161 46.0
RcHm_v2.0_Chr2g0167411 Rosa chinensis HOM05D001730 ORTHO05D004519 2.1e-17 93.2 167 46.1
SGA_v2.0_scaffold4G02433 Striga asiatica HOM05D001730 ORTHO05D004519 2.1e-17 93.2 130 46.9
arahy.Tifrunner.gnm1.ann1.S7AN2D Arachis hypogaea HOM05D001730 ORTHO05D004519 2.7e-17 92.8 161 46.0
BcaC01g04503 Brassica carinata HOM05D001730 ORTHO05D004519 3.5e-17 92.4 132 47.0
BolC3t16244H Brassica oleracea HOM05D001730 ORTHO05D002202 3.5e-17 92.4 132 47.0
Cc07_g03590 Coffea canephora HOM05D001730 ORTHO05D004519 3.5e-17 92.4 159 43.4
Migut.H00682 Erythranthe guttata HOM05D001730 ORTHO05D004519 3.5e-17 92.4 137 46.7
MD17G1051900 Malus domestica HOM05D001730 ORTHO05D004519 3.5e-17 92.4 128 50.0
PSO063G6669 Papaver somniferum HOM05D001730 ORTHO05D004519 3.5e-17 92.4 151 47.0
Hund13191 Selenicereus undatus HOM05D001730 ORTHO05D004519 4.6e-17 92.0 142 48.6
Nitab4.5_0000212g0080 Nicotiana tabacum HOM05D001730 ORTHO05D004519 6.0e-17 91.7 127 47.2
Potri.017G086500 Populus trichocarpa HOM05D001730 ORTHO05D004519 6.0e-17 91.7 160 45.0
Ciclev10011434m.g Citrus clementina HOM05D001730 ORTHO05D004519 7.8e-17 91.3 150 45.3
Nitab4.5_0000118g0010 Nicotiana tabacum HOM05D001730 ORTHO05D004519 1.0e-16 90.9 135 47.4
Sabra17G0076200 Salix brachista HOM05D001730 ORTHO05D004519 1.0e-16 90.9 161 44.1
CANSAT64G1919 Cannabis sativa HOM05D001730 ORTHO05D004519 1.3e-16 90.5 128 49.2
Lj1g0005155 Lotus japonicus HOM05D001730 ORTHO05D004519 1.3e-16 90.5 128 50.8
DCAR_025856 Daucus carota HOM05D001730 ORTHO05D004519 1.7e-16 90.1 123 49.6
Sc11g0007160 Simmondsia chinensis HOM05D001730 ORTHO05D004519 1.7e-16 90.1 133 44.4
ATR0752G123 Amborella trichopoda HOM05D001730 ORTHO05D004519 2.3e-16 89.7 121 47.9
BcaC05g30383 Brassica carinata HOM05D001730 ORTHO05D004519 2.3e-16 89.7 156 42.3
C03p39800 Brassica napus HOM05D000321 ORTHO05D002202 3.0e-16 89.4 134 46.3
Migut.K01306 Erythranthe guttata HOM05D001730 ORTHO05D004519 3.0e-16 89.4 123 51.2
Carub.0003s0105 Capsella rubella HOM05D001730 ORTHO05D004519 3.9e-16 89.0 167 41.3
TPR.G33603 Trifolium pratense HOM05D001730 ORTHO05D004519 3.9e-16 89.0 132 49.2
Haze_14505 Corylus avellana HOM05D001730 ORTHO05D004519 5.1e-16 88.6 160 45.6
MSTRG.23920 Avicennia marina HOM05D001730 ORTHO05D004519 6.6e-16 88.2 133 45.1
BcaC05g30493 Brassica carinata HOM05D001730 ORTHO05D004519 6.6e-16 88.2 138 44.2
C09p75430 Brassica napus HOM05D001730 ORTHO05D004519 6.6e-16 88.2 138 44.2
AUR62018105 Chenopodium quinoa HOM05D001730 ORTHO05D004519 6.6e-16 88.2 123 48.8
AUR62034439 Chenopodium quinoa HOM05D001730 ORTHO05D004519 6.6e-16 88.2 123 48.8
A03p32700 Brassica napus HOM05D000321 ORTHO05D000204 8.6e-16 87.8 133 45.9
CDE02G0445 Ceratophyllum demersum HOM05D001730 ORTHO05D004519 8.6e-16 87.8 131 43.5
vmacro18181 Vaccinium macrocarpon HOM05D001730 ORTHO05D004519 8.6e-16 87.8 121 45.5
Cfa007583 Carpinus fangiana HOM05D001730 ORTHO05D004519 1.1e-15 87.4 156 42.9
Dinv34126 Davidia involucrata HOM05D001730 ORTHO05D004519 1.1e-15 87.4 139 46.0
Eucgr.I01959 Eucalyptus grandis HOM05D001730 ORTHO05D004519 1.1e-15 87.4 140 44.3
AL3G11140 Arabidopsis lyrata HOM05D001730 ORTHO05D004519 1.5e-15 87.0 170 42.4
CDE09G0505 Ceratophyllum demersum HOM05D001730 ORTHO05D004519 1.5e-15 87.0 129 44.2
Glyma.18G261600 Glycine max HOM05D001730 ORTHO05D004519 1.5e-15 87.0 148 43.2
Psat3g199280 Pisum sativum HOM05D001730 ORTHO05D004519 2.5e-15 86.3 152 46.1
BolC5t35117H Brassica oleracea HOM05D001730 ORTHO05D004519 5.6e-15 85.1 133 45.1
Aa31LG5G12510 Aethionema arabicum HOM05D001730 ORTHO05D004519 7.3e-15 84.7 143 42.0
AT3G01120 Arabidopsis thaliana HOM05D001730 ORTHO05D004519 7.3e-15 84.7 170 42.4
Sed0026483 Sechium edule HOM05D001730 ORTHO05D004519 7.3e-15 84.7 121 47.9
Ca_06787_v3 Cicer arietinum L. HOM05D001730 ORTHO05D004519 1.6e-14 83.6 129 48.1
CAN.G127.23 Capsicum annuum HOM05D001730 ORTHO05D004519 3.6e-14 82.4 129 45.7
BraA03t12438Z Brassica rapa HOM05D001730 ORTHO05D004519 2.3e-13 79.7 131 43.5
CiPaw.03G024300 Carya illinoinensis HOM05D001730 ORTHO05D004519 2.3e-13 79.7 138 43.5
CSS0028295 Camellia sinensis var. sinensis HOM05D001730 ORTHO05D004519 5.2e-13 78.6 125 47.2
ECA232G2365 Erigeron canadensis HOM05D001730 ORTHO05D004519 1.2e-12 77.4 133 43.6
ClCG10G015340 Citrullus lanatus HOM05D001730 ORTHO05D004519 2.6e-12 76.3 135 40.7
Peaxi162Scf00166g01052 Petunia axillaris HOM05D001730 ORTHO05D004519 4.4e-12 75.5 123 45.5
TAR623G0149 Trochodendron aralioides HOM05D001730 ORTHO05D004519 5.8e-12 75.1 109 49.5
MELO3C009845.2 Cucumis melo HOM05D001730 ORTHO05D004519 1.3e-11 73.9 138 39.9
SalBow1G3742 Salvia bowleyana HOM05D001730 ORTHO05D004519 2.9e-11 72.8 144 38.2
GSVIVG01011450001 Vitis vinifera HOM05D001730 ORTHO05D004519 2.9e-11 72.8 122 43.4
CsaV3_3G041150 Cucumis sativus L. HOM05D001730 ORTHO05D004519 1.4e-10 70.5 138 39.1
EL10Ac2g03004 Beta vulgaris HOM05D001730 ORTHO05D004519 2.4e-10 69.7 122 45.1
HanXRQChr11g0325161 Helianthus annuus HOM05D001730 ORTHO05D004519 5.4e-10 68.6 128 42.2
Medtr7g011230 Medicago truncatula HOM05D001730 ORTHO05D004519 1.2e-09 67.4 130 40.8
QL02p084735 Quercus lobata HOM05D001730 ORTHO05D004519 6.0e-09 65.1 157 35.0
BcaC03g13415 Brassica carinata HOM05D001730 ORTHO05D004519 1.3e-08 63.9 122 40.2
Manes.02G132001 Manihot esculenta HOM05D001730 ORTHO05D023306 1.3e-08 63.9 65 55.4
Peaxi162Scf00451g00513 Petunia axillaris HOM05D001730 ORTHO05D004519 1.7e-08 63.5 72 56.9
AagrBONN_evm.TU.Sc2ySwM_362.2686 Anthoceros agrestis HOM05D001730 ORTHO05D004519 5.1e-08 62.0 126 41.3
HPP92_018345 Vanilla planifolia HOM05D001730 ORTHO05D004519 8.6e-08 61.2 154 35.1
SEGI_35498 Sequoiadendron giganteum HOM05D001730 ORTHO05D004519 1.5e-07 60.5 140 37.1
Oeu015939.1 Olea europaea HOM05D001730 ORTHO05D023306 3.3e-07 59.3 78 52.6
SHI25863 Sapria himalayana HOM05D001730 ORTHO05D004519 3.3e-07 59.3 149 34.2
CAN.G991.4 Capsicum annuum HOM05D001730 ORTHO05D115372 1.6e-06 57.0 115 40.9
Mapoly0022s0171 Marchantia polymorpha HOM05D001730 ORTHO05D004519 4.7e-06 55.5 122 40.2


User provided reference genes

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