Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G096000 Theobroma cacao HOM05D003995 ORTHO05D004800 0.0e+00 1358.6 706 100.0
COL.COLO4_30474 Corchorus olitorius HOM05D003995 ORTHO05D004800 0.0e+00 1187.6 704 86.9
Duzib235G0154 Durio zibethinus HOM05D003995 ORTHO05D004800 0.0e+00 1167.5 691 87.6
Gorai.009G136200 Gossypium raimondii HOM05D003995 ORTHO05D004800 0.0e+00 1164.1 706 86.8
Gohir.A05G128000 Gossypium hirsutum HOM05D003995 ORTHO05D004800 0.0e+00 1160.2 706 86.1
Gohir.D05G132500 Gossypium hirsutum HOM05D003995 ORTHO05D004800 0.0e+00 1152.9 706 86.3
Gohir.A02G119100 Gossypium hirsutum HOM05D003995 ORTHO05D004800 0.0e+00 1144.0 706 84.8
Gohir.D03G059900 Gossypium hirsutum HOM05D003995 ORTHO05D004800 0.0e+00 1137.1 706 85.1
Gorai.003G063800 Gossypium raimondii HOM05D003995 ORTHO05D004800 0.0e+00 1120.5 698 84.7
Gorai.010G229800 Gossypium raimondii HOM05D003995 ORTHO05D004800 1.5e-308 1062.4 706 81.4
Gohir.D06G197450 Gossypium hirsutum HOM05D003995 ORTHO05D004800 9.3e-306 1053.1 706 80.9
GSVIVG01017039001 Vitis vinifera HOM05D003995 ORTHO05D004800 2.7e-281 971.8 713 72.8
QL05p021104 Quercus lobata HOM05D003995 ORTHO05D004800 5.7e-279 964.1 713 72.7
CiPaw.02G147500 Carya illinoinensis HOM05D003995 ORTHO05D004800 2.4e-277 958.7 712 71.8
Manes.04G131700 Manihot esculenta HOM05D003995 ORTHO05D004800 1.7e-275 952.6 710 70.6
Potri.001G187000 Populus trichocarpa HOM05D003995 ORTHO05D004800 7.2e-274 947.2 710 71.0
Cfa002115 Carpinus fangiana HOM05D003995 ORTHO05D004800 1.2e-273 946.4 711 71.2
Manes.11G036200 Manihot esculenta HOM05D003995 ORTHO05D004800 1.5e-271 939.5 726 69.0
Haze_16334 Corylus avellana HOM05D003995 ORTHO05D004800 9.7e-271 936.8 728 69.6
Prupe.3G063200 Prunus persica HOM05D003995 ORTHO05D004800 3.7e-270 934.9 714 70.4
Atru.chr1.3467 Acer truncatum HOM05D003995 ORTHO05D004800 1.4e-264 916.4 698 71.2
Hma1.2p1_1689F.1_g297670 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.3e-264 915.6 710 69.2
Actinidia21699 Actinidia chinensis HOM05D003995 ORTHO05D004800 2.0e-263 912.5 712 68.0
Cpa.g.sc109.33 Carica papaya HOM05D003995 ORTHO05D004800 1.4e-261 906.4 704 69.0
MD09G1207100 Malus domestica HOM05D003995 ORTHO05D004800 3.5e-260 901.7 715 68.5
FvH4_6g32000 Fragaria vesca HOM05D003995 ORTHO05D004800 7.7e-260 900.6 713 68.0
CSS0043166 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 5.0e-259 897.9 712 67.4
TWI12G0239 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 5.0e-259 897.9 710 68.5
TAR624G1104 Trochodendron aralioides HOM05D003995 ORTHO05D004800 6.5e-259 897.5 719 69.8
CiPaw.01G233700 Carya illinoinensis HOM05D003995 ORTHO05D004800 7.2e-258 894.0 710 68.5
CSS0042187 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 2.1e-257 892.5 712 67.3
CANSAT56G4226 Cannabis sativa HOM05D003995 ORTHO05D004800 4.7e-257 891.3 709 69.1
TWI75G1811 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 1.4e-256 889.8 708 68.4
Glyma.07G017700 Glycine max HOM05D003995 ORTHO05D004800 2.3e-256 889.0 714 67.8
FAN05G2434 Fragaria x ananassa HOM05D003995 ORTHO05D004800 1.2e-255 886.7 728 66.5
TWI18G0079 Tripterygium wilfordii HOM05D003995 ORTHO05D004800 4.1e-253 878.2 713 66.6
TAR102G0002 Trochodendron aralioides HOM05D003995 ORTHO05D004800 9.1e-253 877.1 721 67.5
MD17G1187800 Malus domestica HOM05D003995 ORTHO05D004800 2.7e-252 875.5 722 66.5
Ciclev10027380m.g Citrus clementina HOM05D003995 ORTHO05D004800 3.5e-252 875.2 736 65.8
VMungo0331G0049 Vigna mungo HOM05D003995 ORTHO05D004800 3.5e-252 875.2 713 66.8
Lj3g0012728 Lotus japonicus HOM05D003995 ORTHO05D004800 7.7e-252 874.0 713 66.2
Dinv30461 Davidia involucrata HOM05D003995 ORTHO05D004800 5.5e-250 867.8 711 66.9
Hma1.2p1_0659F.1_g197350 Hydrangea macrophylla HOM05D003995 ORTHO05D004800 2.1e-249 865.9 712 66.9
FAN14G0476 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.6e-249 865.1 713 65.9
Dinv38000 Davidia involucrata HOM05D003995 ORTHO05D004800 3.2e-245 852.0 698 66.8
Ca_11524_v3 Cicer arietinum L. HOM05D003995 ORTHO05D004800 4.1e-245 851.7 716 65.9
Lalb_Chr01g0013091 Lupinus albus HOM05D003995 ORTHO05D004800 2.7e-244 849.0 711 65.7
FAN02G0974 Fragaria x ananassa HOM05D003995 ORTHO05D004800 3.5e-244 848.6 712 64.9
Phvul.010G147000 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 4.5e-244 848.2 712 64.5
PSO210G6397 Papaver somniferum HOM05D003995 ORTHO05D004800 2.3e-243 845.9 727 63.7
PSO210G6330 Papaver somniferum HOM05D003995 ORTHO05D004800 3.9e-243 845.1 726 63.8
arahy.Tifrunner.gnm1.ann1.8U94IH Arachis hypogaea HOM05D003995 ORTHO05D004800 2.8e-241 839.0 714 64.3
Lalb_Chr25g0280081 Lupinus albus HOM05D003995 ORTHO05D004800 4.7e-241 838.2 712 65.7
Medtr8g013720 Medicago truncatula HOM05D003995 ORTHO05D004800 1.8e-240 836.3 722 64.8
FAN09G2208 Fragaria x ananassa HOM05D003995 ORTHO05D004800 4.0e-240 835.1 712 64.3
Cc00_g10390 Coffea canephora HOM05D003995 ORTHO05D004800 7.5e-239 830.9 712 63.8
Psat4g198440 Pisum sativum HOM05D003995 ORTHO05D004800 2.9e-238 828.9 724 64.2
TPR.G14825 Trifolium pratense HOM05D003995 ORTHO05D004800 1.4e-237 826.6 722 64.8
PGR102G1287 Punica granatum HOM05D003995 ORTHO05D004800 4.6e-236 821.6 715 62.4
Glyma.08G202900 Glycine max HOM05D003995 ORTHO05D004800 3.9e-235 818.5 713 63.7
Peaxi162Scf00090g00073 Petunia axillaris HOM05D003995 ORTHO05D004800 8.6e-235 817.4 708 62.6
Eucgr.F03056 Eucalyptus grandis HOM05D003995 ORTHO05D004800 5.6e-234 814.7 711 63.2
PGR102G1422 Punica granatum HOM05D003995 ORTHO05D004800 5.6e-234 814.7 713 63.5
Nitab4.5_0002549g0020 Nicotiana tabacum HOM05D003995 ORTHO05D004800 7.3e-234 814.3 705 62.3
Sc12g0009570 Simmondsia chinensis HOM05D003995 ORTHO05D004800 9.5e-234 813.9 713 61.0
CAN.G60.5 Capsicum annuum HOM05D003995 ORTHO05D004800 1.2e-233 813.5 708 62.6
CSS0032416 Camellia sinensis var. sinensis HOM05D003995 ORTHO05D004800 6.2e-233 811.2 701 64.6
Aqoxy7G01498 Aquilegia oxysepala HOM05D003995 ORTHO05D004800 1.1e-232 810.4 717 63.0
CsaV3_3G023750 Cucumis sativus L. HOM05D003995 ORTHO05D004800 6.8e-232 807.7 712 64.0
THA.LOC104817968 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.7e-230 803.1 706 63.5
Oeu050081.1 Olea europaea HOM05D003995 ORTHO05D004800 6.4e-230 801.2 713 61.7
Oeu017626.1 Olea europaea HOM05D003995 ORTHO05D004800 1.4e-229 800.0 713 62.1
Sp3g14640 Schrenkiella parvula HOM05D003995 ORTHO05D004800 5.4e-229 798.1 712 62.5
Thhalv10020187m.g Eutrema salsugineum HOM05D003995 ORTHO05D004800 7.1e-229 797.7 711 62.4
DCAR_019957 Daucus carota HOM05D003995 ORTHO05D004800 1.2e-228 797.0 709 61.5
AT3G16270 Arabidopsis thaliana HOM05D003995 ORTHO05D004800 6.6e-227 791.2 713 63.0
PGSC0003DMG400008535 Solanum tuberosum HOM05D003995 ORTHO05D004800 8.6e-227 790.8 714 62.2
Rhsim08G0225700 Rhododendron simsii HOM05D003995 ORTHO05D004800 1.9e-226 789.6 711 61.3
AL3G29010 Arabidopsis lyrata HOM05D003995 ORTHO05D004800 2.1e-225 786.2 712 62.4
Eucgr.J02949 Eucalyptus grandis HOM05D003995 ORTHO05D004800 2.8e-225 785.8 714 62.2
Carub.0003s1602 Capsella rubella HOM05D003995 ORTHO05D004800 3.6e-225 785.4 710 62.8
Aa31LG8G3420 Aethionema arabicum HOM05D003995 ORTHO05D004800 2.3e-224 782.7 712 62.5
THA.LOC104810534 Tarenaya hassleriana HOM05D003995 ORTHO05D004800 1.5e-223 780.0 709 61.9
BcaC05g28900 Brassica carinata HOM05D003995 ORTHO05D004800 2.6e-223 779.2 714 61.6
BolC5t33775H Brassica oleracea HOM05D003995 ORTHO05D004800 2.6e-223 779.2 714 61.6
BcaB06g25717 Brassica carinata HOM05D003995 ORTHO05D004800 4.4e-223 778.5 714 60.9
CARHR091480 Cardamine hirsuta HOM05D003995 ORTHO05D004800 5.8e-223 778.1 712 61.7
Sed0011470 Sechium edule HOM05D003995 ORTHO05D004800 7.6e-223 777.7 713 61.0
EL10Ac9g22110 Beta vulgaris HOM05D003995 ORTHO05D004800 8.3e-222 774.2 714 60.6
Sed0003559 Sechium edule HOM05D003995 ORTHO05D004800 1.4e-221 773.5 715 62.4
MSTRG.23509 Avicennia marina HOM05D003995 ORTHO05D004800 5.4e-221 771.5 711 59.4
BraA05t22150Z Brassica rapa HOM05D003995 ORTHO05D004800 9.2e-221 770.8 714 61.2
A05p33250 Brassica napus HOM05D003995 ORTHO05D004800 1.2e-220 770.4 714 60.8
C05p50240 Brassica napus HOM05D003995 ORTHO05D004800 7.8e-220 767.7 713 60.9
Glyma.13G355800 Glycine max HOM05D003995 ORTHO05D004800 1.5e-218 763.5 722 60.7
Hund06648 Selenicereus undatus HOM05D003995 ORTHO05D004800 9.6e-218 760.8 715 58.9
Migut.H00960 Erythranthe guttata HOM05D003995 ORTHO05D004800 1.8e-216 756.5 709 58.4
Sopen04g017970 Solanum pennellii HOM05D003995 ORTHO05D004800 3.1e-216 755.7 711 60.9
AUR62031875 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.2e-215 753.8 715 59.2
Solyc04g047770.3 Solanum lycopersicum HOM05D003995 ORTHO05D004800 1.2e-215 753.8 711 60.9
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 3.4e-215 752.3 724 59.7
Nitab4.5_0004354g0010 Nicotiana tabacum HOM05D003995 ORTHO05D004800 5.4e-213 745.0 865 50.9
Lsat_1_v5_gn_2_39201 Lactuca sativa HOM05D003995 ORTHO05D004800 3.5e-212 742.3 726 60.1
AUR62022169 Chenopodium quinoa HOM05D003995 ORTHO05D004800 1.1e-205 720.7 712 57.6
VMungo1080G0563 Vigna mungo HOM05D003995 ORTHO05D004800 3.9e-203 712.2 710 58.2
Nn2g11632 Nelumbo nucifera HOM05D003995 ORTHO05D004800 4.3e-202 708.8 716 58.4
HanXRQChr14g0434431 Helianthus annuus HOM05D003995 ORTHO05D004800 1.3e-201 707.2 717 60.0
Phvul.005G170500 Phaseolus vulgaris HOM05D003995 ORTHO05D004800 4.9e-198 695.3 719 56.6
MELO3C012986.2 Cucumis melo HOM05D003995 ORTHO05D004800 1.4e-197 693.7 642 61.5
SGA_v2.0_scaffold44G16540 Striga asiatica HOM05D003995 ORTHO05D004800 3.2e-197 692.6 719 56.1
Ah.01g005620 Amaranthus hybridus HOM05D003995 ORTHO05D004800 5.4e-197 691.8 711 55.1
Ah.01g021840 Amaranthus hybridus HOM05D003995 ORTHO05D004800 4.6e-196 688.7 708 57.8
ATR0705G117 Amborella trichopoda HOM05D003995 ORTHO05D004800 7.9e-196 688.0 732 56.1
SalBow1G2060 Salvia bowleyana HOM05D003995 ORTHO05D004800 1.8e-192 676.8 740 53.6
HanXRQChr01g0017801 Helianthus annuus HOM05D003995 ORTHO05D004800 1.9e-189 666.8 717 55.2
ECA248G2833 Erigeron canadensis HOM05D003995 ORTHO05D004800 6.0e-188 661.8 698 56.6
SHI11063 Sapria himalayana HOM05D003995 ORTHO05D004800 2.5e-181 639.8 695 54.2
CDE02G3541 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 7.1e-181 638.3 714 52.4
CDE08G1118 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 6.1e-180 635.2 719 52.4
Os01g0232400 Oryza sativa ssp. japonica HOM05D003995 ORTHO05D004800 2.8e-177 626.3 720 52.8
Zm00001eb339300 Zea mays HOM05D003995 ORTHO05D004800 1.1e-176 624.4 716 52.9
Zm00001eb119170 Zea mays HOM05D003995 ORTHO05D004800 2.1e-172 610.1 712 52.4
Gohir.A06G188875 Gossypium hirsutum HOM05D003995 ORTHO05D004800 7.4e-170 601.7 370 86.2
QL04p048641 Quercus lobata HOM05D003995 ORTHO05D004800 1.3e-161 574.3 608 54.6
Nn3g18163 Nelumbo nucifera HOM05D003995 ORTHO05D004800 5.5e-157 558.9 383 76.0
HPP92_008092 Vanilla planifolia HOM05D003995 ORTHO05D004800 9.4e-157 558.1 739 48.6
MBI01_g24453_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 9.7e-154 548.1 699 51.6
SEGI_23305 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 1.2e-143 514.6 738 45.0
SalBow1G1048 Salvia bowleyana HOM05D003995 ORTHO05D004800 9.4e-141 505.0 376 69.4
SalBow1G5856 Salvia bowleyana HOM05D003995 ORTHO05D004800 9.4e-141 505.0 376 69.4
Lj4A820G41 Lonicera japonica HOM05D003995 ORTHO05D004800 1.6e-140 504.2 550 54.5
vmacro18871 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 1.7e-134 484.2 321 78.2
RcHm_v2.0_Chr2g0139591 Rosa chinensis HOM05D003995 ORTHO05D004800 2.8e-132 476.9 321 77.9
Sabra01G0153300 Salix brachista HOM05D003995 ORTHO05D004800 1.2e-124 451.4 389 63.2
RcHm_v2.0_Chr2g0139601 Rosa chinensis HOM05D003995 ORTHO05D004800 1.3e-118 431.4 391 61.4
Mapoly0022s0096 Marchantia polymorpha HOM05D003995 ORTHO05D004800 8.9e-107 392.1 747 39.1
Hund00665 Selenicereus undatus HOM05D003995 ORTHO05D004800 9.9e-106 388.7 476 48.7
AagrBONN_evm.TU.Sc2ySwM_362.567 Anthoceros agrestis HOM05D003995 ORTHO05D004800 1.2e-100 371.7 781 37.8
Pp3c2_17390 Physcomitrium patens HOM05D003995 ORTHO05D004800 4.0e-99 366.7 742 38.5
arahy.Tifrunner.gnm1.ann1.QE1TJP Arachis hypogaea HOM05D003995 ORTHO05D004800 1.6e-95 354.8 393 52.4
SMO340G0180 Selaginella moellendorffii HOM05D003995 ORTHO05D004800 2.7e-95 354.0 725 36.8
MBI01_g39826_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 1.3e-94 351.7 635 40.0
Actinidia39150 Actinidia chinensis HOM05D003995 ORTHO05D004800 6.9e-75 286.2 411 49.1
vmacro18870 Vaccinium macrocarpon HOM05D003995 ORTHO05D004800 7.1e-72 276.2 347 47.6
Actinidia32709 Actinidia chinensis HOM05D003995 ORTHO05D004800 3.0e-70 270.8 348 47.1
ClCG07G013220 Citrullus lanatus HOM05D003995 ORTHO05D004800 8.7e-70 269.2 336 51.2
CBR_g36315 Chara braunii HOM05D003995 ORTHO05D004800 1.0e-62 245.7 469 37.5
Actinidia32710 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.0e-57 226.9 153 80.4
CBR_g31940 Chara braunii HOM05D003995 ORTHO05D004800 7.2e-56 223.0 593 31.5
Glyma.15G018300 Glycine max HOM05D003995 ORTHO05D004800 5.3e-51 206.8 264 47.0
Actinidia09000 Actinidia chinensis HOM05D003995 ORTHO05D004800 5.2e-46 190.3 362 40.9
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 1.1e-43 182.6 234 43.2
CDE02G4060 Ceratophyllum demersum HOM05D003995 ORTHO05D004800 2.2e-41 174.9 154 57.1
HanXRQChr10g0310971 Helianthus annuus HOM05D003995 ORTHO05D004800 2.9e-41 174.5 182 57.7
Cre12.g545300 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 3.2e-32 144.4 411 29.2
Cre12.g545150 Chlamydomonas reinhardtii HOM05D003995 ORTHO05D004800 3.0e-30 137.9 389 30.1
Gohir.D03G024850 Gossypium hirsutum HOM05D003995 ORTHO05D004800 1.5e-29 135.6 115 61.7
Gorai.003G083400 Gossypium raimondii HOM05D003995 ORTHO05D004800 5.7e-29 133.7 115 61.7
Lj4C820T9 Lonicera japonica HOM05D003995 ORTHO05D004800 6.3e-28 130.2 69 94.2
FAN18G0014 Fragaria x ananassa HOM05D003995 ORTHO05D004800 5.4e-27 127.1 69 89.9
Actinidia39149 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.0e-23 113.2 157 43.9
Actinidia08998 Actinidia chinensis HOM05D003995 ORTHO05D004800 8.8e-22 109.8 57 98.2
MBI07_g11499_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 2.6e-21 108.2 62 85.5
PRCOL_00002233 Prasinoderma coloniale HOM05D003995 ORTHO05D004800 9.8e-21 106.3 420 26.2
SEGI_12342 Sequoiadendron giganteum HOM05D003995 ORTHO05D004800 8.3e-20 103.2 83 56.6
FvH4_5g23151 Fragaria vesca HOM05D003995 ORTHO05D004800 1.0e-17 96.3 51 90.2
FvH4_7g32131 Fragaria vesca HOM05D003995 ORTHO05D004800 8.6e-17 93.2 51 88.2
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 3.6e-15 87.8 56 80.4
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 6.4e-12 77.0 101 48.5
MBI03_g21265_MAGBIO Magnolia biondii HOM05D003995 ORTHO05D004800 3.9e-09 67.8 59 57.6
Pp3c1_18430 Physcomitrium patens HOM05D003995 ORTHO05D004800 8.6e-09 66.6 422 25.8
MCO13G545 Micromonas commoda HOM05D003995 ORTHO05D004800 2.1e-07 62.0 377 23.1


User provided reference genes

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