Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 5.4e-159 564.3 292 100.0
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 9.0e-146 520.4 292 92.1
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 2.6e-145 518.8 292 91.8
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 4.5e-145 518.1 292 91.8
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 7.6e-145 517.3 292 92.1
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 8.1e-139 497.3 327 81.7
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 2.1e-126 456.1 297 81.8
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 2.3e-125 452.6 299 79.3
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 3.3e-124 448.7 299 79.3
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 1.3e-123 446.8 298 80.9
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 4.8e-123 444.9 317 76.3
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 8.2e-123 444.1 297 79.1
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 2.4e-122 442.6 299 77.6
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 3.1e-122 442.2 293 77.8
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 3.1e-122 442.2 303 78.2
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 2.6e-121 439.1 300 77.0
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 3.4e-121 438.7 302 77.8
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 7.7e-121 437.6 300 77.0
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 1.0e-120 437.2 290 78.6
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 1.3e-120 436.8 300 76.7
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 2.2e-120 436.0 296 76.7
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 2.9e-120 435.6 302 76.5
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 2.9e-120 435.6 300 77.0
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 2.9e-120 435.6 303 76.6
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 5.0e-120 434.9 299 77.6
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 8.5e-120 434.1 317 73.5
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 8.5e-120 434.1 297 77.8
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 1.1e-119 433.7 317 73.5
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 1.1e-119 433.7 307 74.6
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 1.9e-119 433.0 295 77.3
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.9e-119 433.0 294 79.3
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 2.5e-119 432.6 296 76.4
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 1.6e-118 429.9 300 76.3
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 5.1e-117 424.9 297 76.4
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 6.7e-117 424.5 302 73.2
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 1.1e-116 423.7 300 74.3
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 1.1e-116 423.7 301 75.7
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.0e-116 422.9 304 74.7
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 2.0e-116 422.9 302 72.8
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 2.6e-116 422.5 299 74.9
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 2.6e-116 422.5 299 75.3
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 3.3e-116 422.2 295 75.9
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 4.3e-116 421.8 300 74.0
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 5.7e-116 421.4 293 75.4
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 7.4e-116 421.0 300 74.7
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.3e-115 420.2 300 74.7
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 1.7e-115 419.9 300 73.7
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 2.8e-115 419.1 301 75.1
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 3.1e-114 415.6 299 75.3
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 6.9e-114 414.5 353 66.3
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 1.2e-113 413.7 301 73.1
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 1.7e-112 409.8 290 75.5
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 2.5e-111 406.0 299 72.9
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.5e-111 406.0 292 74.7
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 2.5e-111 406.0 362 63.5
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 2.5e-111 406.0 238 90.3
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 3.2e-111 405.6 298 71.8
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 1.2e-110 403.7 288 74.3
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 2.1e-110 402.9 305 72.1
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 4.7e-110 401.7 298 72.5
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 6.1e-110 401.4 299 72.9
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 1.4e-109 400.2 299 71.2
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 3.0e-109 399.1 319 66.1
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 5.2e-109 398.3 290 73.1
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 5.2e-109 398.3 290 73.1
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 8.8e-109 397.5 245 83.7
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 1.1e-108 397.1 290 72.4
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 3.3e-108 395.6 295 71.5
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 5.7e-108 394.8 243 83.1
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 7.4e-108 394.4 302 71.2
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 7.4e-108 394.4 305 70.8
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 1.3e-107 393.7 282 74.1
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 2.8e-107 392.5 282 75.5
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 2.8e-107 392.5 249 81.9
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 4.1e-106 388.7 292 70.5
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.1e-106 388.7 368 60.6
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 7.0e-106 387.9 316 67.1
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 1.6e-105 386.7 302 69.2
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 4.5e-105 385.2 268 75.0
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 1.7e-104 383.3 304 69.4
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 5.5e-103 378.3 341 62.5
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 3.6e-102 375.6 254 77.2
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.1e-100 370.5 278 71.9
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 2.0e-100 369.8 317 64.0
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 1.7e-99 366.7 253 77.5
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 4.8e-99 365.2 261 74.7
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 2.0e-97 359.8 275 71.6
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 3.5e-97 359.0 293 68.6
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 4.5e-97 358.6 255 74.9
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 1.7e-96 356.7 369 58.3
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 1.7e-96 356.7 317 61.5
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 5.0e-96 355.1 296 67.6
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 1.8e-93 346.7 330 59.4
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 2.3e-93 346.3 290 64.5
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 4.0e-93 345.5 257 71.6
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 1.7e-91 340.1 207 82.6
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 4.1e-90 335.5 205 82.0
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 7.0e-90 334.7 230 74.8
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 1.6e-89 333.6 282 65.6
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 5.9e-89 331.6 308 64.3
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 1.3e-88 330.5 290 64.1
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.7e-88 330.1 250 71.2
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 4.2e-87 325.5 202 83.2
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 6.1e-86 321.6 244 73.4
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.8e-85 320.1 325 56.0
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 2.3e-85 319.7 296 62.8
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 6.8e-85 318.2 245 71.0
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 9.8e-84 314.3 234 71.8
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 1.8e-82 310.1 286 59.1
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 2.7e-81 306.2 263 64.6
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 8.6e-80 301.2 256 66.0
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.6e-78 297.0 293 58.0
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 1.3e-75 287.3 184 80.4
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 1.4e-74 283.9 191 72.3
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.5e-71 273.9 290 54.8
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 4.3e-71 272.3 248 60.1
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 8.0e-70 268.1 350 46.9
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 8.0e-70 268.1 165 82.4
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 2.6e-68 263.1 224 66.1
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 9.8e-68 261.2 276 54.7
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 7.3e-63 245.0 156 85.3
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 1.9e-58 230.3 201 61.7
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 3.4e-52 209.5 158 68.4
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 1.3e-51 207.6 130 83.8
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 5.4e-34 149.1 136 61.0
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 8.1e-30 135.2 329 34.0
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 8.4e-27 125.2 294 31.3
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 1.5e-20 104.4 326 30.7
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 2.0e-20 104.0 81 70.4
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 1.5e-15 87.8 178 39.9
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 1.5e-15 87.8 106 50.0
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 4.5e-12 76.3 57 64.9
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 7.6e-12 75.5 52 76.9
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 1.0e-08 65.1 52 61.5
CARHR145100 Cardamine hirsuta HOM05D005817 ORTHO05D007140 3.3e-07 60.1 67 53.7
CDE04G0373 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 8.2e-06 55.5 45 73.3


User provided reference genes

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