Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 2.8e-151 538.9 333 100.0
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 2.6e-109 399.4 376 74.7
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 3.0e-105 386.0 347 68.3
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.2e-98 364.0 380 67.4
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 6.7e-97 358.2 382 67.0
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 8.2e-95 351.3 384 66.1
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 4.5e-77 292.4 367 56.7
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 1.4e-70 270.8 375 48.5
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 1.9e-67 260.4 378 47.9
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 7.3e-67 258.5 374 49.7
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.2e-66 257.7 399 46.4
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 1.6e-66 257.3 382 46.6
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.6e-66 257.3 371 46.4
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 3.6e-66 256.1 374 49.2
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 6.1e-66 255.4 374 47.6
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 3.1e-65 253.1 421 43.0
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 4.0e-65 252.7 372 45.7
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 8.9e-65 251.5 372 47.0
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.2e-64 251.1 371 48.0
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 1.7e-63 247.3 335 46.3
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 4.9e-63 245.7 369 44.7
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 1.4e-62 244.2 374 44.7
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 1.9e-62 243.8 376 47.1
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 4.1e-62 242.7 348 45.1
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 5.4e-62 242.3 348 46.6
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 7.0e-62 241.9 372 45.2
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 9.2e-62 241.5 347 46.7
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 1.2e-61 241.1 356 48.0
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 1.3e-60 237.7 341 56.0
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.7e-60 237.3 373 47.2
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 1.7e-60 237.3 376 45.7
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 2.3e-60 236.9 345 47.5
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 5.0e-60 235.7 360 47.2
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 5.0e-60 235.7 375 43.7
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 5.0e-60 235.7 376 44.7
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 1.5e-59 234.2 370 46.8
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 1.9e-59 233.8 376 47.1
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 1.9e-59 233.8 383 44.9
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 3.3e-59 233.0 370 43.8
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 7.3e-59 231.9 361 47.1
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 6.2e-58 228.8 383 44.4
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 8.9e-57 224.9 365 44.1
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.9e-57 224.9 365 44.4
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 8.9e-57 224.9 353 43.1
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 2.6e-56 223.4 351 45.9
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 3.4e-56 223.0 394 42.4
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 7.5e-56 221.9 371 44.7
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 1.7e-55 220.7 344 45.3
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.9e-55 219.2 383 43.1
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 7.1e-54 215.3 368 40.8
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 9.2e-54 214.9 364 39.8
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 2.1e-53 213.8 371 43.9
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 1.0e-52 211.5 374 42.5
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 1.3e-52 211.1 410 39.0
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 3.0e-52 209.9 382 40.3
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 6.6e-52 208.8 366 41.5
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 2.5e-51 206.8 371 42.3
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 2.5e-51 206.8 341 45.5
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 9.5e-51 204.9 343 43.4
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 6.2e-50 202.2 371 41.8
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 2.3e-49 200.3 333 42.0
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 4.0e-49 199.5 399 40.6
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 2.0e-48 197.2 381 38.3
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 7.6e-48 195.3 366 41.3
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.2e-47 193.7 320 42.5
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 2.2e-47 193.7 370 41.9
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 3.7e-47 193.0 368 41.3
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 3.7e-47 193.0 336 46.1
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 6.4e-47 192.2 366 39.9
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 6.4e-47 192.2 347 41.2
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 2.4e-46 190.3 368 39.4
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 1.6e-45 187.6 347 39.2
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 1.0e-44 184.9 336 43.2
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 6.6e-44 182.2 379 39.1
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 1.5e-43 181.0 377 41.4
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 2.5e-43 180.3 406 36.9
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 1.6e-42 177.6 354 46.0
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 1.8e-41 174.1 347 38.0
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 2.4e-41 173.7 330 38.8
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 3.4e-40 169.9 266 51.9
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 5.8e-40 169.1 266 49.6
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 5.8e-40 169.1 266 49.6
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 9.9e-40 168.3 290 42.4
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 2.9e-39 166.8 265 47.5
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 2.9e-39 166.8 265 47.5
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 3.8e-39 166.4 290 41.7
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 3.8e-39 166.4 322 38.5
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 6.4e-39 165.6 265 47.9
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 6.4e-39 165.6 325 41.2
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 8.4e-39 165.2 319 39.2
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 9.3e-38 161.8 226 46.0
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 8.7e-36 155.2 261 44.8
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 8.7e-36 155.2 360 37.2
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 2.1e-34 150.6 279 42.3
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 2.1e-34 150.6 383 36.6
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.8e-34 150.2 317 42.0
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 3.6e-34 149.8 407 32.4
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 1.1e-33 148.3 390 35.4
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.6e-32 143.7 321 37.7
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 9.9e-32 141.7 282 39.0
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 6.0e-29 132.5 114 61.4
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 7.9e-29 132.1 250 42.0
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.7e-28 131.0 134 56.0
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.3e-26 124.8 239 44.4
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 5.3e-25 119.4 65 81.5
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 5.3e-25 119.4 68 79.4
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 5.8e-24 115.9 221 38.0
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 5.8e-24 115.9 191 43.5
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 2.9e-23 113.6 298 33.2
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 1.1e-22 111.7 377 31.3
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.4e-22 111.3 376 30.6
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 2.1e-21 107.5 246 36.6
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 2.1e-21 107.5 105 61.0
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.5e-21 106.7 107 64.5
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.5e-21 106.7 107 64.5
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 8.7e-20 102.1 199 39.7
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 8.7e-20 102.1 67 74.6
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 9.6e-19 98.6 301 29.6
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 6.2e-18 95.9 112 53.6
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.1e-17 95.1 129 45.7
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 1.1e-17 95.1 218 36.2
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 4.9e-15 86.3 107 56.1
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 1.6e-10 71.2 76 51.3
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 3.4e-08 63.5 188 28.7
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.5e-06 56.2 94 38.3
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 5.5e-06 56.2 94 38.3
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 9.3e-06 55.5 204 30.4


User provided reference genes

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